Statescope/environment.yaml at master · tgac-vumc/Statescope · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
name: Statescope
channels:
  - pkgs/main
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - bzip2=1.0.8=h5eee18b_6
  - ca-certificates=2025.12.2=h06a4308_0
  - expat=2.7.4=h7354ed3_0
  - ld_impl_linux-64=2.44=h153f514_2
  - libexpat=2.7.4=h7354ed3_0
  - libffi=3.4.4=h6a678d5_1
  - libgcc=15.2.0=h69a1729_7
  - libgcc-ng=15.2.0=h166f726_7
  - libgomp=15.2.0=h4751f2c_7
  - libnsl=2.0.0=h5eee18b_0
  - libstdcxx=15.2.0=h39759b7_7
  - libstdcxx-ng=15.2.0=hc03a8fd_7
  - libuuid=1.41.5=h5eee18b_0
  - libxcb=1.17.0=h9b100fa_0
  - libzlib=1.3.1=hb25bd0a_0
  - ncurses=6.5=h7934f7d_0
  - openssl=3.0.19=h1b28b03_0
  - packaging=25.0=py310h06a4308_1
  - pip=26.0.1=pyhc872135_0
  - pthread-stubs=0.3=h0ce48e5_1
  - python=3.10.19=h6fa692b_0
  - readline=8.3=hc2a1206_0
  - setuptools=80.10.2=py310h06a4308_0
  - sqlite=3.51.1=he0a8d7e_0
  - tk=8.6.15=h54e0aa7_0
  - tzdata=2025c=he532380_0
  - wheel=0.46.3=py310h06a4308_0
  - xorg-libx11=1.8.12=h9b100fa_1
  - xorg-libxau=1.0.12=h9b100fa_0
  - xorg-libxdmcp=1.1.5=h9b100fa_0
  - xorg-xorgproto=2024.1=h5eee18b_1
  - xz=5.6.4=h5eee18b_1
  - zlib=1.3.1=hb25bd0a_0
  - pip:
    - Jinja2==3.1.6
    - MarkupSafe==3.0.3
    - Statescope==1.0.7
    - anndata==0.11.4
    - array-api-compat==1.13.0
    - cachetools==7.0.1
    - certifi==2026.1.4
    - charset-normalizer==3.4.4
    - contourpy==1.3.2
    - cuda-bindings==12.9.4
    - cuda-pathfinder==1.3.4
    - cycler==0.12.1
    - deap==1.4.3
    - dill==0.4.1
    - exceptiongroup==1.3.1
    - filelock==3.20.3
    - fonttools==4.61.1
    - fsspec==2026.2.0
    - h5py==3.15.1
    - idna==3.11
    - joblib==1.5.3
    - kiwisolver==1.4.9
    - llvmlite==0.46.0
    - matplotlib==3.10.8
    - mpmath==1.3.0
    - multiprocess==0.70.19
    - natsort==8.4.0
    - networkx==3.4.2
    - numba==0.63.1
    - numpy==1.26.4
    - nvidia-cublas-cu12==12.8.4.1
    - nvidia-cuda-cupti-cu12==12.8.90
    - nvidia-cuda-nvrtc-cu12==12.8.93
    - nvidia-cuda-runtime-cu12==12.8.90
    - nvidia-cudnn-cu12==9.10.2.21
    - nvidia-cufft-cu12==11.3.3.83
    - nvidia-cufile-cu12==1.13.1.3
    - nvidia-curand-cu12==10.3.9.90
    - nvidia-cusolver-cu12==11.7.3.90
    - nvidia-cusparse-cu12==12.5.8.93
    - nvidia-cusparselt-cu12==0.7.1
    - nvidia-nccl-cu12==2.27.5
    - nvidia-nvjitlink-cu12==12.8.93
    - nvidia-nvshmem-cu12==3.4.5
    - nvidia-nvtx-cu12==12.8.90
    - pandas==1.5.3
    - patsy==1.0.2
    - pillow==12.1.1
    - pyparsing==3.3.2
    - python-dateutil==2.9.0.post0
    - pytz==2025.2
    - requests==2.32.5
    - scikit-learn==1.7.2
    - scipy==1.15.3
    - seaborn==0.13.2
    - six==1.17.0
    - statescope-autogenes==1.0.4.post2
    - statsmodels==0.14.6
    - sympy==1.14.0
    - threadpoolctl==3.6.0
    - torch==2.10.0
    - torchvision==0.25.0
    - triton==3.6.0
    - typing_extensions==4.15.0
    - urllib3==2.6.3