DESCRIPTION

Package: StatescopeR
Type: Package
Title: StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles
Version: 1.1.0
Authors@R:c(
    person(given = "Mischa", family = "Steketee", role = c("aut", "cre"),
             email = "m.f.b.steketee@amsterdamumc.nl",
             comment = c(ORCID = "0000-0001-7138-7554")),
    person(given = "Bauke", family = "Ylstra", role = "ths",
             email = "b.ylstra@amsterdamumc.nl",
             comment = c(ORCID = "0000-0001-9479-3010")),
    person(given = "Yongsoo", family = "Kim", role = "ths",
             email = "yo.kim@amsterdamumc.nl",
             comment = c(ORCID = "0000-0002-2995-2131")),         
    person(given = 'KWF Kankerbestrijding',
                    role = 'fnd'))
Depends: R (>= 4.6.0)
Imports: S4Vectors, SummarizedExperiment, reticulate, methods, SingleCellExperiment, matrixStats, scran, basilisk, Matrix, ComplexHeatmap, ggplot2, cowplot, utils
Suggests: 
    BiocStyle,
    knitr,
    RefManageR,
    rmarkdown,
    sessioninfo,
    scRNAseq,
    scuttle,
    testthat
Description: StatescopeR is an R wrapper around Statescope, a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
StagedInstall: no
biocViews: GeneExpression, RNASeq, SingleCell, Bayesian, Transcriptomics,  Software
URL: https://github.com/tgac-vumc/StatescopeR 
BugReports: https://github.com/tgac-vumc/StatescopeR/issues
VignetteBuilder: knitr
Config/testthat/edition: 3