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adding gc-percentage calculation and reporting#13

Merged
cimendes merged 2 commits intomainfrom
nfgc-gc-count-dev
Feb 20, 2025
Merged

adding gc-percentage calculation and reporting#13
cimendes merged 2 commits intomainfrom
nfgc-gc-count-dev

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@NickChen10
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Description

Modifying fastq-peek.sh to calculate GC count, total base count, and GC percentage and to report GC percentage to stdout.

Type of change

  • New feature (non-breaking change which adds functionality)
  • This change requires a documentation update

How Has This Been Tested?

The modified fastq-peek.sh was tested against the sample.fastq dataset within the data directory. The resulting calculations and output were confirmed to be in concordance with the expected results denoted in exercise01.md.

Checklist:

  • My code adheres to the repository style guide
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • My changes generate no new warnings
  • New and existing tests pass locally with my changes

@cimendes cimendes merged commit bf1f5c4 into main Feb 20, 2025
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2 participants