Update Mercury Prep and Mercury Batch workflows to generate output compatible with GISAID's v4 command line uploader#226
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erikwolfsohn wants to merge 3 commits intotheiagen:mainfrom
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When GISAID released their new CLI package, they changed some of the column headings. Since these changes only affect CLI uploads, this modification just adds a new output "GISAID_covCLI_metadata"