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Add new metrics #17

chelseabright96 wants to merge 70 commits into from

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@chelseabright96 chelseabright96 commented May 12, 2024

  1. Add mapping evaluation metrics: presence score, cluster preservation, and percentage anchors
  2. Add option to validate on query in classifiers (work in progress)
  3. add new webhook
  4. add fetal brain atlas
  5. keep all obs columns of query during concatenation

@chelseabright96 chelseabright96 requested a review from farhadmd7 May 12, 2024 04:03
chelseabright96 and others added 14 commits May 12, 2024 18:20
chelseabright96 and others added 30 commits June 17, 2024 18:39
@chelseabright96
change max_epochs for fetal brain
156803c
@chelseabright96
fix output error
ef15501
@chelseabright96
move notify backend metrics
f6669ae
@chelseabright96
fix bug percent unknown
4451c67
@chelseabright96
increase fetal brain epochs
7800d39
@chelseabright96
add cell_type_key_list
aeab4e4
@chelseabright96
fix bug
c0b40f7
@chelseabright96
fix bug
f57f30d
@chelseabright96
add cell type key
d8a4027
@chelseabright96
fix duplicate bug
b50940f
@chelseabright96
add scanvi pred to ref
82e8e31
@chelseabright96
add classifiers for cell type list
3e7b529
@chelseabright96
add multi label classification and pretrain uncert
8f969ff
@chelseabright96
print model id
79e6027
@chelseabright96
fix bug
afdd270
@chelseabright96
fix bug
f3ab38d
@chelseabright96
uncomment
a223478
@chelseabright96
change batch key
0effefc
@chelseabright96
fix batch column
3c71ab6
@chelseabright96
fix batch key issue
d519585
@chelseabright96
add hnoca extended name
ce1bece
@chelseabright96
Merge branch 'pretrain' into processing
90106d3
@chelseabright96
change cell type key hnoca extended
4f783d9
@chelseabright96
fix cell type key bug
80206d0
@chelseabright96
fix bug
205e6e0
@chelseabright96
fix batch error
f42d572
@chelseabright96
fix hnoca issue
d0b469f
@chelseabright96
downsample pbmc for download
64ef413
@chelseabright96
add finer cell types hlca
f870cf9
@chelseabright96
add ann_level_5
ee3cea2
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@farhadmd7 farhadmd7 Awaiting requested review from farhadmd7

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