Search results

Unable to run downstream_fine_tune.ipynb

Status: Open.

#30 In theislab/nicheformer;

· moa4020 opened on Aug 21, 2025

Fine-tuned model for Allen Brain

Status: Open.

#28 In theislab/nicheformer;

· AixinZhang-DA opened on Jul 25, 2025

get_embeddings runtime

Status: Open.

#27 In theislab/nicheformer;

· talbCgen opened on Jul 9, 2025

Installing the latest development version issue

Status: Open.

#26 In theislab/nicheformer;

· LQC-wr opened on Jun 7, 2025

How are spatial coordinates used in pretraining and downstream tasks ?

Status: Open.

#25 In theislab/nicheformer;

· TawhidMM opened on Jun 3, 2025

Is there any tutorial of imputation task for imaging-based data?

Status: Open.

#24 In theislab/nicheformer;

· rinrin20233 opened on May 20, 2025

sample data for finetuning tutorial

Status: Open.

#23 In theislab/nicheformer;

· dpeng28 opened on Apr 11, 2025

<code>cellxgene_schema</code> version issue

Status: Open.

#21 In theislab/nicheformer;

· hanhou opened on Feb 21, 2025

The niche_label of MERFISH mouse brain

Status: Open.

#15 In theislab/nicheformer;

· Lzzzzx opened on Sep 18, 2024

How to calculate the non-zero mean vector ？

Status: Open.

#13 In theislab/nicheformer;

· Hanminghao opened on Aug 29, 2024

End-to-end example for generating embeddings with <code>get_embeddings.py</code>

Status: Open.

#12 In theislab/nicheformer;

· justincosentino opened on Aug 19, 2024

MERFISH mouse brain data

Status: Open.

#11 In theislab/nicheformer;

· yehuicheng2002 opened on Aug 6, 2024