v2.1.0

wham 2.1.0

Major improvements

• (2.1.0) Change compilation of WHAM model to use TMBad framework. Runtimes should be reduced to between 1/3 and 1/2 of that using previous versions, and size of saved models should be significantly smaller. 598e7bd

Minor improvements

• (2.1.0) compare_wham_output now produces an html plot browser like plot_wham_output by default. 598e7bd
• (2.1.0) allow greater control of how inputs are averaged for projections, including apparent survival deviations. 598e7bd
• (2.1.0) allow models with different length of data series to be plotted with compare_wham_output. 598e7bd
• (2.0.0.9004) add standard error estimation of catch projections. 980b02e
• (2.0.0.9003) add options to set initial values in basic_info argument of prepare_wham_input for searches FXSPR, FMSY, and in project_wham() and in prepare_projection() for search of F at specified catch in projection year. Tidied up screen printing and tests. cf87740
• (2.0.0.9002) Improve robustness of component set_* functions and add some screen output for index and fleet selectivity block information. d3dd9e9

Bug fixes

• (2.1.0) fix years for averaging covariates for projections to use the years of the covariate rather than the years of the population(s). 598e7bd
• (2.0.0.9007) fix bug in plotting F retrospective runs when there are multiple fleets. 7c16651
• (2.0.0.9006) fix bug where retros do not evaluate correctly with truncated ages in age comp (bluefish). 655a9f1
• (2.0.0.9005) fix bug where percentFXSPR and percentFMSY were not being used in projections. 1219efc
• (2.0.0.9003) fix bug in jitter_wham() with do_parallel = FALSE. cf87740
• (2.0.0.9001) fix bug in compare_wham_models() when applied to fitted models without $sdrep. 281a136