@@ -178,10 +178,12 @@ installed.
178178
179179## Perl modules
180180
181- Using a simple CPAN package installer such as [ CPAN Minus] ( https://metacpan.org/pod/App::cpanminus ) ,
182- i.e. ` cpanm ` , is highly recommended for ease and simplicity in installing modules
183- from [ CPAN] ( https://metacpan.org ) . It can install directly from CPAN or take a URL
184- or downloaded archive file. Other CPAN package managers are available too.
181+ Using a simple CPAN package installer such as [ CPAN
182+ Minus] ( https://metacpan.org/pod/App::cpanminus ) , i.e. ` cpanm ` , is highly recommended
183+ for ease and simplicity in installing modules from [ CPAN] ( https://metacpan.org ) . It
184+ can install directly from CPAN or take a URL or downloaded archive file. Follow the
185+ link to find out how to install ` cpanm ` . Other CPAN package managers are available
186+ too, if that's your preference.
185187
186188The following Perl packages should be explicitly installed. Most of these will
187189bring along a number of dependencies (which in turn bring along more dependencies). In
@@ -265,7 +267,7 @@ are preferred because they're more efficient and spread the load on modern
265267multi-CPU environments. You may download these from the UCSC Genome Browser
266268utilities section for either
267269[ Linux] ( http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/ ) or
268- [ macOS] ( http://hgdownload.soe.ucsc.edu/admin/exe/macOSX.x86_64 / ) . Copy them to
270+ [ macOS] ( http://hgdownload.soe.ucsc.edu/admin/exe/macOSX.arm64 / ) . Copy them to
269271your ` bin ` directory in your ` PATH ` , for example ` $HOME/bin ` , ` $HOME/perl5/bin ` ,
270272or ` /usr/local/bin ` . Be sure to make them executable by running ` chmod +x ` on
271273each file.
@@ -277,7 +279,7 @@ each file.
277279
278280An example for downloading on Linux:
279281
280- for name in wigToBigWig bedGraphToBigWig bigWigToWig bedToBigBed; \
282+ for name in wigToBigWig bedGraphToBigWig bigWigToWig bigWigToBedGraph bedToBigBed bigBedToBed ; \
281283 do curl -o $HOME/bin/$name http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/$name \
282284 && chmod +x $HOME/bin/$name; done;
283285
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