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docs/AdvancedInstallation.md

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@@ -178,10 +178,12 @@ installed.
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## Perl modules
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Using a simple CPAN package installer such as [CPAN Minus](https://metacpan.org/pod/App::cpanminus),
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i.e. `cpanm`, is highly recommended for ease and simplicity in installing modules
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from [CPAN](https://metacpan.org). It can install directly from CPAN or take a URL
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or downloaded archive file. Other CPAN package managers are available too.
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Using a simple CPAN package installer such as [CPAN
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Minus](https://metacpan.org/pod/App::cpanminus), i.e. `cpanm`, is highly recommended
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for ease and simplicity in installing modules from [CPAN](https://metacpan.org). It
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can install directly from CPAN or take a URL or downloaded archive file. Follow the
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link to find out how to install `cpanm`. Other CPAN package managers are available
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too, if that's your preference.
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The following Perl packages should be explicitly installed. Most of these will
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bring along a number of dependencies (which in turn bring along more dependencies). In
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multi-CPU environments. You may download these from the UCSC Genome Browser
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utilities section for either
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[Linux](http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/) or
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[macOS](http://hgdownload.soe.ucsc.edu/admin/exe/macOSX.x86_64/). Copy them to
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[macOS](http://hgdownload.soe.ucsc.edu/admin/exe/macOSX.arm64/). Copy them to
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your `bin` directory in your `PATH`, for example `$HOME/bin`, `$HOME/perl5/bin`,
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or `/usr/local/bin`. Be sure to make them executable by running `chmod +x` on
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each file.
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An example for downloading on Linux:
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for name in wigToBigWig bedGraphToBigWig bigWigToWig bedToBigBed; \
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for name in wigToBigWig bedGraphToBigWig bigWigToWig bigWigToBedGraph bedToBigBed bigBedToBed; \
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do curl -o $HOME/bin/$name http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/$name \
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&& chmod +x $HOME/bin/$name; done;
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