Long chromosome names

Overdue release capturing minor updates, including bug fixes in parsing chromosome name

Paired Samples

Support for multiple alignments (for applications requiring comparison of allelic frequencies in matched samples)

Support for vcfs describing multiple nearby substitutions in one entry (e.g. calls output by Platypus)

Bug fixes for dealing with links that point to the same genomic position but different substitution types

Minor changes in comments

v0.1.1

Thesaurus of genetic variation v0.1.1

Some improvements in thesaurus generation programs (better merging of overlapping thesaurus entries)

Some additional tools to annotate vtf files