The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
The Atlas of Immunoglobulin Repertoires (TheAIR)
Comparison of gene usage in immune repertoires under different biological conditions
Construction of IHGV sequences from RNA-seq
(Under development) Computational framework for probabilistic models of immune receptor assembling.
Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).
IGBuddy automates the data extraction and processing pipeline for the UT Health Houston IMM Doris Lab by converting and analyzing sequence data.
IgIDivA (Immunoglobulin Intraclonal Diversification Analysis) is a purpose-built tool for the analysis of the intraclonal diversification process using high-throughput sequencing data. It is written in shiny R.
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
Simulation of false tandem substitutions from input sequencing data
A pipeline for preprocessing and annotation of NGS immunoglobulin repertoire data.
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
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