🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
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Updated
Jul 18, 2017 - Python
🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
IBM LSF manual translation and practical experience
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
parallelise encryption of EGA submissions onto a cluster - a partial EgaCryptor replacement
Efficiently distribute large builds across batch-queued compute clusters such as those using LSF or OpenLava.
An automated metagenomics pipeline. Runs in parallel with modular components. All changes are made in the config file. Directory structure auto populates. Dependency is a .txt with list of SRA Accession IDs.
Python wrapper for starting distributed Ray clusters with LSF job submission
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