🚿A Tidy Tool for Phylogenetic Tree Data Manipulation
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Jul 2, 2026 - R
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phylogenetic-tree
Here are 25 public repositories matching this topic...
Fungal Validation and Identification Pipeline
taxonomy fungi species-delimitation phylogenetic-tree species-identification multigene sequence-validation
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Jul 13, 2026 - Python
A feature rich and easy to use phylogenetic tree editor
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Apr 26, 2021 - Java
Kssdtree is designed for the construction and visualization of phylogenetic trees of large-scale genomes (e.g., bacterial genomes).
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Feb 13, 2026 - C
A pipeline to construct phylogenetic tree using BUSCOs
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Aug 16, 2018 - Python
web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
python hashing flask bioinformatics bloom-filter needleman-wunsch dna alignment indexation alignment-free adn alignement phylogenetic-tree bioinformatique k-mers dna-alignment phylogenie
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Dec 20, 2020 - JavaScript
Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)
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May 12, 2022 - R
Draw a phylogenetic tree, along with a table of metadata
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Oct 14, 2021 - Python
A tool for phlyo tree, a phylogenetic tree construction software.
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Sep 9, 2024 - Rust
A stand-alone tool for evaluating simple statistics of orthologs
phylogenetics orthology-inference phylogenetic-tree orthology orthology-assignments orthology-relationships
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Sep 20, 2021 - Python
Bird (avian) phylogenetic tree with bird pictures
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Oct 30, 2024
Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017
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Jul 9, 2017 - Objective-C
A modern React library for interactive phylogenetic tree visualization, supporting Newick trees, zooming, panning, rerooting, clade interaction, and customizable layouts.
react svg bioinformatics typescript canvas npm-package data-visualization phylogenetics newick tree-viewer phylogenetic-tree tree-visualization
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Apr 27, 2026 - TypeScript
GUI and CLI workflow for phylogenetic tree construction, tanglegram comparison, and optional Foldseek protein-structure similarity.
python java linux cli gui bioinformatics swing evolution phylogenetics fasta batch-processing mrbayes phylip mafft phylogenetic-tree tanglegram iqtree foldseek
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Jun 22, 2026 - Java
Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.
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Nov 7, 2019 - Python
Script for creating a tANI distance matrix for use in phylogenetic reconstruction.
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Apr 16, 2024 - Perl
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
phylogenetics evolutionary-algorithms evolution-simulation c-plus-plus-library static-library individual-based-modelling evolutionary-biology phylogenetic-tree coalescence live-tracking forward-in-time-simulation artificial-life-simulations lineage-tracing lineage-tree coalescence-tree
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Apr 19, 2024 - C++
A pipeline for MSA and phylogenetic tree generation from a fasta file of neucleotide sequences
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Apr 9, 2025 - Python
Fast alignment-free phylogenetic inference using spaced k-mers and IMMI framework. Supports 10,000+ taxa. Outperforms IQ-TREE2 GTR by 1.8x on indel-rich data.
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Jun 28, 2026
[Python] Construction of SARS-CoV-2 Phylogenetic Tree.
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Oct 27, 2024 - Python
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