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Introduction to TorchIO

Open In Colab

MRI Sample

This repository contains a tutorial on using TorchIO for medical image processing.

  • Loading and visualizing MRI scans
  • Applying various transformations

Dataset

We use NIfTI MRI and Segmentation Label samples from the ASNR-RSNA-MICCAI Africa Dataset of Brain MRI with tumors.

Running the Tutorial

You can follow along with the tutorial by running the provided Notebook Open In Colab

References

[1] TorchIO

[2] The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa)


About

In this tutorial, we will cover the basics of using TorchIO by loading and viewing some MRIs and applying various transformations. We will use single-channel T2-FLAIR NIfTI samples from the ASNR-RSNA-MICCAI Africa Dataset of Brain MRI with tumors. This tutorial can be followed in a script, or notebook of sort (Colab, Jupyter, etc).

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