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New version working with TrackMate V8#19

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tinevez merged 51 commits into
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v8
Nov 17, 2025
Merged

New version working with TrackMate V8#19
tinevez merged 51 commits into
masterfrom
v8

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@tinevez tinevez commented Nov 17, 2025

Introduces Omnipose integration

Screenshot 2025-11-17 at 15 55 52

Rework Cellpose integration -> made for Cellpose 3

Screenshot 2025-11-17 at 16 01 18

Add a Cellpose-SAM integration

trackmate-cellpose-sam-01

tinevez and others added 30 commits July 4, 2024 13:37
There are too many options in the advanced detector to fit in with the
default GUI size. The scroll bar does not appear if not needed.
The main channel is 1-value, the secondary one is 0-valued, and
they cannot be larger than the number of channels cellpose accepts.
The other 3 detectors are currently broken.
And the non-GPU version does not work (one CLI instance but several
folders in which the images are saved...)
The reason was that the same instance of the cli was used in
all threads, each setting a different target folder to save the
images. Of course this led to race conditions.

The easy fix was to put the setting of the target folder and
the generation of the command line in a synchronized block.
Not neat but works.
@tinevez tinevez merged commit d08304e into master Nov 17, 2025
@tinevez tinevez deleted the v8 branch November 17, 2025 15:02
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3 participants