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Adapt to the TrackMate v8 API #3

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Merged
tinevez merged 6 commits into from
Nov 18, 2025
Merged

Adapt to the TrackMate v8 API #3

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55b0b5f
Update parent pom and TrackMate version.
tinevez Jul 18, 2025
371e110
Adapt to new TrackMate v8 API
tinevez Jul 18, 2025
4280635
Tweak the doc.
tinevez Jul 18, 2025
3339906
Move icon to the factory class, and use it there.
tinevez Jul 18, 2025
23dfe8b
Better look for the config panel.
tinevez Jul 18, 2025
321cb13
Update parent to pom-scijava 43.0.0 and TrackMate dep to 8.0.0
tinevez Nov 18, 2025
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15 changes: 3 additions & 12 deletions pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,13 +5,13 @@
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>34.0.0</version>
<version>43.0.0</version>
<relativePath />
</parent>

<groupId>sc.fiji</groupId>
<artifactId>TrackMate-Weka</artifactId>
<version>1.3.2-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>

<name>TrackMate-Weka</name>
<description>TrackMate detector based on the Weka trainable segmentation plugin.</description>
Expand Down Expand Up @@ -84,9 +84,7 @@
<!-- NB: Deploy releases to the SciJava Maven repository. -->
<releaseProfiles>sign,deploy-to-scijava</releaseProfiles>

<javaGeom.version>0.11.1</javaGeom.version>

<TrackMate.version>7.10.2</TrackMate.version>
<TrackMate.version>8.0.0</TrackMate.version>
</properties>

<dependencies>
Expand Down Expand Up @@ -131,13 +129,6 @@
<artifactId>scijava-common</artifactId>
</dependency>

<!-- Other dependencies -->
<dependency>
<groupId>math.geom2d</groupId>
<artifactId>javaGeom</artifactId>
<version>${javaGeom.version}</version>
</dependency>

<!-- Test dependencies -->
<dependency>
<groupId>junit</groupId>
Expand Down
25 changes: 11 additions & 14 deletions src/main/java/fiji/plugin/trackmate/weka/WekaDetectorConfigurationPanel.java
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Original file line number Diff line number Diff line change
Expand Up @@ -8,12 +8,12 @@
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
Expand All @@ -26,6 +26,7 @@
import static fiji.plugin.trackmate.gui.Fonts.FONT;
import static fiji.plugin.trackmate.gui.Fonts.SMALL_FONT;
import static fiji.plugin.trackmate.gui.Icons.MAGNIFIER_ICON;
import static fiji.plugin.trackmate.weka.WekaDetectorFactory.ICON;
import static fiji.plugin.trackmate.weka.WekaDetectorFactory.KEY_CLASSIFIER_FILEPATH;
import static fiji.plugin.trackmate.weka.WekaDetectorFactory.KEY_CLASS_INDEX;
import static fiji.plugin.trackmate.weka.WekaDetectorFactory.KEY_PROBA_THRESHOLD;
Expand All @@ -36,7 +37,6 @@
import java.awt.Insets;
import java.beans.PropertyChangeListener;
import java.io.File;
import java.net.URL;
import java.text.DecimalFormat;
import java.text.NumberFormat;
import java.util.Arrays;
Expand All @@ -46,7 +46,6 @@
import java.util.Vector;

import javax.swing.DefaultComboBoxModel;
import javax.swing.ImageIcon;
import javax.swing.JButton;
import javax.swing.JComboBox;
import javax.swing.JFormattedTextField;
Expand Down Expand Up @@ -80,8 +79,6 @@ public class WekaDetectorConfigurationPanel extends ConfigurationPanel

private static final NumberFormat THRESHOLD_FORMAT = new DecimalFormat( "#.##" );

protected static final ImageIcon ICON = new ImageIcon( getResource( "images/TrackMateWeka-logo-100px.png" ) );

private static final String TITLE = WekaDetectorFactory.NAME;

private static final FileFilter fileFilter = new FileNameExtensionFilter( "Weka classifier files.", "model" );
Expand Down Expand Up @@ -114,9 +111,8 @@ public WekaDetectorConfigurationPanel( final Settings settings, final Model mode

final GridBagLayout gridBagLayout = new GridBagLayout();
gridBagLayout.columnWidths = new int[] { 144, 0, 32 };
gridBagLayout.rowHeights = new int[] { 0, 84, 0, 27, 0, 0, 0, 0, 37, 23 };
gridBagLayout.rowHeights = new int[] { 0, 0, 0, 27, 0, 0, 0, 0, 150 };
gridBagLayout.columnWeights = new double[] { 0.0, 1.0, 0.0 };
gridBagLayout.rowWeights = new double[] { 0., 1., 0., 0., 0., 0., 0., 0., 0., 0. };
setLayout( gridBagLayout );

final JLabel lblDetector = new JLabel( TITLE, ICON, JLabel.RIGHT );
Expand All @@ -140,7 +136,13 @@ public WekaDetectorConfigurationPanel( final Settings settings, final Model mode
gbcLblHelptext.insets = new Insets( 5, 10, 5, 10 );
gbcLblHelptext.gridx = 0;
gbcLblHelptext.gridy = 1;
add( GuiUtils.textInScrollPanel( GuiUtils.infoDisplay( WekaDetectorFactory.INFO_TEXT ) ), gbcLblHelptext );
gbcLblHelptext.weighty = 1.;
add( GuiUtils.textInScrollPanel( GuiUtils.infoDisplay(
"<html>Online documentation: <br/>"
+ "<a href='" + WekaDetectorFactory.DOC_URL + "'>"
+ WekaDetectorFactory.DOC_URL
+ "</a></html>" ) ),
gbcLblHelptext );

/*
* Channel selector.
Expand Down Expand Up @@ -433,9 +435,4 @@ public void run()
}
}.start();
}

protected static URL getResource( final String name )
{
return WekaDetectorFactory.class.getClassLoader().getResource( name );
}
}
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