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New tskit.jit module

enhancementNew feature or requestNew feature or request

Status: Open.

#3135 In tskit-dev/tskit;

· jeromekelleher opened on Apr 7, 2025

Update dev requirements

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Open.

#3134 In tskit-dev/tskit;

· agladstein opened on Apr 3, 2025

 ·  

Python 0.6.2

Add citation for <code>extend_haplotypes</code>

Status: Open.

#3133 In tskit-dev/tskit;

· hyanwong opened on Apr 3, 2025

Setuptools license deprecation

Status: Open.

#3113 In tskit-dev/tskit;

· benjeffery opened on Mar 21, 2025

 ·  

Python 0.7

String encoding in structured metadata arrays

Status: Open.

#3097 In tskit-dev/tskit;

· benjeffery opened on Mar 7, 2025

 ·  

Python 0.6.2

<code>allele_frequency_spectrum</code> with a 1-d sample set throws uninformative error

Status: Open.

#3083 In tskit-dev/tskit;

· petrelharp opened on Jan 25, 2025

Documentation/Tutorial for multithreading

Status: Open.

#3078 In tskit-dev/tskit;

· hanbin973 opened on Jan 10, 2025

Map mutations using Sankoff's algorithm

Status: Open.

#3071 In tskit-dev/tskit;

· hyanwong opened on Dec 11, 2024

allow non-sample nodes for the "right hand side" on <code>genetic_relatedness_vector</code>

Status: Open.

#3062 In tskit-dev/tskit;

· petrelharp opened on Nov 21, 2024

<code>genetic_relatedness</code> thinks it needs 2 samples sets but is valid with only one

Status: Open.

#3055 In tskit-dev/tskit;

· petrelharp opened on Nov 14, 2024

Document that inverting <code>pair_coalescence_rate</code> should account for factor of 2 to match diploid Ne

Status: Open.

#3054 In tskit-dev/tskit;

· hyanwong opened on Nov 14, 2024

<code>ts.pair_coalescence_rates</code> can give large or infinite rates

bugSomething isn't workingSomething isn't working

Status: Open.

#3048 In tskit-dev/tskit;

· hyanwong opened on Nov 6, 2024