Dat Hacks - Pan Genome Sequence Analysis Project

This project analyzes genomic sequence data and their associated ODGF coordinates.

Data Files

• chr1_25240000_25460000_data.json: Genomic sequence data for chromosome 1 region 25240000-25460000
• hacks.json: Contains sequence length and ODGF coordinate data
• Various visualization outputs (*.png files)

Scripts

• analyze_coordinates.py: Analyzes correlation between sequence length and ODGF coordinates
• modify_sequences.py: Script for sequence modifications

Key Findings

• Strong correlation (0.985) between sequence length and number of ODGF coordinates
• Coordinate patterns:
  • Sequences <1000bp: 2 coordinates
  • 15-35kb sequences: 2-3 coordinates

  • 70kb sequences: 5+ coordinates