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Using iLINCS pipeline to upload signature #2

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47833bb
Added time stamped to files to upload
pilare Nov 12, 2019
83b9b74
Used unique subfolders for upload
pilare Nov 12, 2019
73ff40b
Cleaned up upload code
pilare Nov 12, 2019
743b378
removed line that is not needed
pilare Nov 12, 2019
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16 changes: 10 additions & 6 deletions usingIlincsApis.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -176,16 +176,20 @@ head(sigs,n=10)
## Find connected signatures based on user submitted full signature
##### Creating a file to upload from previouslsy downloaded signature file
```{r}
write.table(signatureData,file="sigFile.tsv",sep="\t",row.names=F,col.names = T,quote=F)
system(paste("head sigFile.tsv"))
tsvFileName <- "sigFile.tsv"
write.table(signatureData,file=tsvFileName,sep="\t",row.names=F,col.names = T,quote=F)
system(paste("head ",tsvFileName,sep=""))
```

### Upload the file
```{r connected signatures by uploading signature file}
apiUrl<-"http://www.ilincs.org/api/SignatureMeta/upload"
sigFile <- "sigFile.tsv"
req <- POST(apiUrl, body=list(file=upload_file("sigFile.tsv")))
signatureFile <- httr::content(req)$status$fileName[[1]]
apiUrl<-"http://www.ilincs.org/api/SignatureUploads/uploadToiLINCS"
req <- POST(apiUrl, body=list(file=upload_file(tsvFileName)))
uploadID <- httr::content(req)$id
uploadID
apiUrl <- paste("http://www.ilincs.org/api/ilincsR/uploadSignature")
req <- POST(apiUrl, body=list(file=tsvFileName,path=uploadID), encode = "form")
signatureFile <- httr::content(req)$fileName[[1]]
signatureFile
```
### Find connected signatures
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