Multicenter, observational study of vapour capture technology in the OR (VCT-OR-MC)

Directory structure

Data

• raw-data: case report forms of all centers.

Manuscript

• manuscript/manuscript.Rmd: main file (contains manuscript and author information) loading all subsections.
• manuscript/sections/*.Rmd: a file per subsection containing the manuscript content.
• manuscript/bibliography/: references in bibtex format.
• manuscript/pandoc/: pandoc related files for word counts etc.

Miscellaneous files

• guix/: guix releated files to ensure a reproducible R and pandoc environment.

Bootstrap

Guix on debian

sudo apt install make git guix

Fetch sources

git clone git@github.com:umg-minai/vct-or-mc.git

Build manuscript

Running make the first time will take some time because guix hast to download the given state and build the image.

make

Modify the manuscript

All the work has to be done in the manuscript/sections/*.Rmd files.

Make targets

• make or make manuscript produces an .html file in manuscript/output/.
• make dist produces a .docx in distribute/ which could be send to the co-authors.
• make validate for data validation.
• make clean removes all generated files.

Predecessor singlecenter study

https://github.com/umg-minai/vct-or

Contact/Contribution

You are welcome to:

• submit suggestions and bug-reports at: https://github.com/umg-minai/vct-or-mc/issues
• send a pull request on: https://github.com/umg-minai/vct-or-mc/
• compose an e-mail to: mail@sebastiangibb.de

We try to follow:

• Conventional Commits
• Semantic Line Breaks