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UM BRCF Bioinformatics Core

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  1. Connor Connor Public

    Deduplication based on custom inline DNA barcodes.

    Python 21 5

  2. Jacquard Jacquard Public

    Suite of command-line tools to expedite analysis of exome variant data from multiple patients and multiple variant callers.

    Python 7 2

  3. Katana Katana Public

    Command-line tool to soft-clip reads based on primer locations.

    Python 5 3

  4. Watermelon Watermelon Public

    RNA-Seq NGS Pipeline

    Python 3

  5. single_cell_env single_cell_env Public

    An environment for single-cell RNAseq

    Dockerfile 2 1

  6. 2021-04-26-umich-rnaseqDemystified 2021-04-26-umich-rnaseqDemystified Public archive

    RNA-Seq Demystified workshop

    HTML 2 1

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  • workshop-intro-single-cell Public

    Intro to Single Cell Workshop lesson plans

    umich-brcf-bioinf/workshop-intro-single-cell’s past year of commit activity
    HTML 0 CC-BY-4.0 0 4 0 Updated Apr 15, 2025
  • workshop-intro-r-rstudio Public
    umich-brcf-bioinf/workshop-intro-r-rstudio’s past year of commit activity
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  • workshop-rnaseq-demystified Public
    umich-brcf-bioinf/workshop-rnaseq-demystified’s past year of commit activity
    HTML 0 CC-BY-4.0 1 0 0 Updated Mar 23, 2025
  • workshop-computational-foundations Public
    umich-brcf-bioinf/workshop-computational-foundations’s past year of commit activity
    HTML 0 0 0 1 Updated Mar 23, 2025
  • 2023-07-31-umich-computational-foundations Public archive

    Computational Foundations Workshop Lessons

    umich-brcf-bioinf/2023-07-31-umich-computational-foundations’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 21, 2025
  • 2023-02-27-umich-computational-foundations Public archive

    Computational Foundations Workshop Lesson Plans

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    HTML 0 0 0 0 Updated Mar 21, 2025
  • 2022-10-31-umich-computational-foundations Public archive

    Computational Foundations Workshop Lessons

    umich-brcf-bioinf/2022-10-31-umich-computational-foundations’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 21, 2025
  • 2023-03-13-umich-rnaseq-demystified Public archive

    RNA-Seq Demystified Workshop Lesson Plans

    umich-brcf-bioinf/2023-03-13-umich-rnaseq-demystified’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 21, 2025
  • 2022-11-14-umich-rnaseq-demystified Public archive

    RNA-Seq Demystified workshop lesson plans

    umich-brcf-bioinf/2022-11-14-umich-rnaseq-demystified’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 21, 2025
  • 2021-11-15-umich-rnaseq-demystified Public archive

    Fall 2021 RNAseq Demystified Workshop

    umich-brcf-bioinf/2021-11-15-umich-rnaseq-demystified’s past year of commit activity
    HTML 1 0 0 0 Updated Mar 21, 2025
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