Slurm support 2.6 #335
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Slurm support 2.6 #335
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- Convert PBS/Torque job submission parameters to Slurm format - Add conditional check for config.submit_type - Convert walltime from D:HH:MM:SS to HH:MM:SS format - Add logger and utilities imports for consistency with other methods - Maintain backward compatibility with PBS in else block 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
- Convert PBS/Torque job submission parameters to Slurm format - Add conditional check for config.submit_type in all methods - Convert walltime from D:HH:MM:SS to HH:MM:SS format - Add logger imports where missing for consistency - Maintain backward compatibility with PBS in else blocks Updated methods: - BGM: Bayesian Graphical Model - FADE: FUBAR Approach to Directional Evolution - MULTIHIT: Multiple hit model analysis - NRM: Natural Rate Model 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
Shell script updates: - app/bgm/bgm.sh - app/busted/busted_submit.sh - app/fade/fade.sh - app/fubar/fubar.sh - app/hivtrace/hivtrace_submit.sh - app/nrm/nrm.sh - app/relax/relax.sh Analysis method refinements: - app/absrel/absrel.js - app/busted/busted.js - app/fel/fel.js - app/gard/gard.js - app/meme/meme.js - app/relax/relax.js - app/slac/slac.js 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
This patch release adds Slurm job scheduler support to additional analysis methods: - FUBAR (Fast Unconstrained Bayesian AppRoximation) - BGM (Bayesian Graphical Model) - FADE (FUBAR Approach to Directional Evolution) - MULTIHIT (Multiple hit model analysis) - NRM (Natural Rate Model) All methods now support both PBS/Torque and Slurm schedulers based on config.submit_type setting. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
- Add Slurm test suite to test/jobqueue.js with sbatch job submission - Fix config.json path in test file (was ../../, now ../) - Filter SlurmJobQueue to only return jobs with a type (datamonkey jobs in Redis) - Fix moment.js deprecation warning for 'Unknown' timestamps in returnSlurmJobInfo - Separate qsub and slurm test suites with conditional skipping based on config - Add cleanup of test jobs in after hook for Slurm tests - Bump version to 2.6.3 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <[email protected]>
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