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Visualizing Contrast fel results

Status: Open.

#1932 In veg/hyphy;

· aniketnaik7 opened on Nov 20, 2025

RELAX issue/bug with 2.5.86

Status: Open.

#1930 In veg/hyphy;

· evandiego83 opened on Nov 17, 2025

Question about how gaps are handled in Hyphy

Status: Open.

#1929 In veg/hyphy;

· qitingcai opened on Nov 12, 2025

internal links on hyphy.org

Status: Open.

#1928 In veg/hyphy;

· mlandis opened on Nov 12, 2025

Using Hyphy-aBSREL on Galaxy

Status: Open.

#1927 In veg/hyphy;

· ajjoson25 opened on Nov 10, 2025

Error while installing hyphy

Status: Open.

#1925 In veg/hyphy;

· whosthisthisswho-rgb opened on Nov 6, 2025

The RELAX and BUSTED-PH analyses yield conflicting results. How should this discrepancy be resolved?

Status: Open.

#1922 In veg/hyphy;

· liamxg opened on Oct 25, 2025

No output

Status: Open.

#1920 In veg/hyphy;

· airinanonna1112-spec opened on Oct 22, 2025

Parameter choice for BUSTED-E, -PH, and RELAX

Status: Open.

#1919 In veg/hyphy;

· LilaBL opened on Oct 19, 2025

Visualizing RELAX rate evolution across a phylogeny

Status: Open.

#1918 In veg/hyphy;

· AryehMiller opened on Oct 17, 2025

Two codons with the mutations which have the same branch distribution pattern, but under different selections

Status: Open.

#1917 In veg/hyphy;

· biozj-tz opened on Oct 16, 2025

Request to include the tree as well as the statistically significant branches for the aBSREL terminal output.

Status: Open.

#1915 In veg/hyphy;

· hannahkimincompbio opened on Oct 7, 2025