Skip to content

Improvements to long-read-giraffe experiments parameter search pipeline#81

Open
ellwi wants to merge 6 commits intovgteam:mainfrom
ellwi:main
Open

Improvements to long-read-giraffe experiments parameter search pipeline#81
ellwi wants to merge 6 commits intovgteam:mainfrom
ellwi:main

Conversation

@ellwi
Copy link
Copy Markdown

@ellwi ellwi commented Mar 4, 2026

Snakefile

  • fixed filenames in length_by _mapping
  • fixed locale errors in join and sort commands throughout
  • changed memory request on speed_from_log and memory_from_log

parameter_search.py

  • added options to sample parameters from lognormal or truncated normal distributions
  • added option to include a "mean" value in parameter_search_config
  • added option to run benchmarks of default and mean parameter sets

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant