pip not python3 compatible #804
Description
It seems that the pip file for toil-vg still relies on execfile() which is python2 specific. Can you change to use exec()? Or am I doing something wrong.
$ pip install toil-vg
Collecting toil-vg
Downloading toil-vg-1.4.1.tar.gz (139 kB)
|████████████████████████████████| 139 kB 13.3 MB/s
ERROR: Command errored out with exit status 1:
command: /net/eichler/vol26/7200/software/modules-sw/toil-vg/202004/Linux/RHEL6/x86_64/toilvenv/bin/python3 -c 'import sys, set
uptools, tokenize; sys.argv[0] = '"'"'/data/nobackup/tmp/pip-install-w5kk3sba/toil-vg/setup.py'"'"'; file='"'"'/data/nobackup/tm
p/pip-install-w5kk3sba/toil-vg/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"
', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base /data/nobackup/tmp/pip-install-w5kk3sb
a/toil-vg/pip-egg-info
cwd: /data/nobackup/tmp/pip-install-w5kk3sba/toil-vg/
Complete output (5 lines):
Traceback (most recent call last):
File "", line 1, in
File "/data/nobackup/tmp/pip-install-w5kk3sba/toil-vg/setup.py", line 7, in
execfile(os.path.join(os.path.dirname(os.path.realpath(file)), "version.py"))
NameError: name 'execfile' is not defined
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.