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unused argument : <code>min.cov</code> in toil-vg vcfeval

Status: Open.

#835 In vgteam/toil-vg;

· zqfang opened on Jun 11, 2021

genotype calling for structral variants

Status: Open.

#834 In vgteam/toil-vg;

· zqfang opened on Jun 11, 2021

toil-vg construct fails at building the GBWT index if you haven't specially specified --vcf_phasing files

Status: Open.

#827 In vgteam/toil-vg;

· ruolin opened on Jan 1, 2021

Encoding issues with coordinates in id_ranges?

Status: Open.

#824 In vgteam/toil-vg;

· mlinderm opened on Aug 27, 2020

Make mkdir in dragen job fault tolerant

Status: Open.

#821 In vgteam/toil-vg;

· cmarkello opened on Aug 6, 2020

Need better name for analysis subcommand

Status: Open.

#817 In vgteam/toil-vg;

· cmarkello opened on Jul 14, 2020

Merges to master time out in the CI tests

Status: Open.

#812 In vgteam/toil-vg;

· adamnovak opened on May 29, 2020

run_whole_alignment doesn't output chromosomal BAMs

Status: Open.

#806 In vgteam/toil-vg;

· cmarkello opened on Apr 24, 2020

pip not python3 compatible

Status: Open.

#804 In vgteam/toil-vg;

· wharvey31 opened on Apr 21, 2020

--force_phasing True on toil-vg construct doesn't work

Status: Open.

#777 In vgteam/toil-vg;

· adamnovak opened on Dec 2, 2019

Flat requirements for whole genome mode are wasteful

Status: Open.

#773 In vgteam/toil-vg;

· adamnovak opened on Nov 15, 2019

toil-vg call throws XGFormatError: Unimplemented XG format version: 0

Status: Open.

#759 In vgteam/toil-vg;

· alancleary opened on Aug 27, 2019