Commit new auto-generated docs

Author: VG Doc Bot

classvg_1_1ZipCode-members.html

@@ -91,7 +91,7 @@
   <tr><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#a9cfedfdd581aaa389054cc1fe579848d">fill_in_zipcode</a>(const code_type *payload, const ZipCodeCollection *oversized_zipcodes, const SnarlDistanceIndex &amp;distance_index, const vg::pos_t &amp;pos)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#a80560ef71e77da7b85129278a46675ce">fill_in_zipcode_from_payload</a>(const code_type *payload)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"></td></tr>
   <tr><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#a7bd50f9f7e2acd1ee2cf9e9cdb535b3f">fill_in_zipcode_from_payload</a>(payload_type payload)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr class="even"><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#ac6d15263258d01f69f9db70a44db1855">fill_in_zipcode_from_pos</a>(const SnarlDistanceIndex &amp;distance_index, const vg::pos_t &amp;pos, bool fill_in_decoder=true)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#a61765fd02422ce2596808b8d75c97b23">fill_in_zipcode_from_pos</a>(const SnarlDistanceIndex &amp;distance_index, const vg::pos_t &amp;pos, bool fill_in_decoder=true, const handlegraph::HandleGraph *graph_ptr=nullptr)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"></td></tr>
   <tr><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#a5baffcb4fe80bf3c0968b18217e14ea5">finished_decoding</a></td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#acbad7130678653add25cc79639b0f886">from_vector</a>(const std::vector&lt; size_t &gt; &amp;values)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"></td></tr>
   <tr><td class="entry"><a class="el" href="classvg_1_1ZipCode.html#aa0f40a265733bd4adfb920006fd9f57a">get_chain_code</a>(const net_handle_t &amp;chain, const SnarlDistanceIndex &amp;distance_index)</td><td class="entry"><a class="el" href="classvg_1_1ZipCode.html">vg::ZipCode</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>

classvg_1_1ZipCode.html

@@ -117,8 +117,8 @@
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
-<tr class="memitem:ac6d15263258d01f69f9db70a44db1855"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvg_1_1ZipCode.html#ac6d15263258d01f69f9db70a44db1855">fill_in_zipcode_from_pos</a> (const SnarlDistanceIndex &amp;distance_index, const <a class="el" href="namespacevg.html#a8232142f432c4dd8e7cfe96e1f50e039">vg::pos_t</a> &amp;pos, bool fill_in_decoder=true)</td></tr>
-<tr class="separator:ac6d15263258d01f69f9db70a44db1855"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a61765fd02422ce2596808b8d75c97b23"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvg_1_1ZipCode.html#a61765fd02422ce2596808b8d75c97b23">fill_in_zipcode_from_pos</a> (const SnarlDistanceIndex &amp;distance_index, const <a class="el" href="namespacevg.html#a8232142f432c4dd8e7cfe96e1f50e039">vg::pos_t</a> &amp;pos, bool fill_in_decoder=true, const <a class="el" href="classhandlegraph_1_1HandleGraph.html">handlegraph::HandleGraph</a> *graph_ptr=nullptr)</td></tr>
+<tr class="separator:a61765fd02422ce2596808b8d75c97b23"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a80560ef71e77da7b85129278a46675ce"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvg_1_1ZipCode.html#a80560ef71e77da7b85129278a46675ce">fill_in_zipcode_from_payload</a> (const <a class="el" href="classvg_1_1ZipCode.html#a8e6e5aaa80410ac7d4772b09f84e71c6">code_type</a> *payload)</td></tr>
 <tr class="separator:a80560ef71e77da7b85129278a46675ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a7bd50f9f7e2acd1ee2cf9e9cdb535b3f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvg_1_1ZipCode.html#a7bd50f9f7e2acd1ee2cf9e9cdb535b3f">fill_in_zipcode_from_payload</a> (<a class="el" href="classvg_1_1ZipCode.html#ad049069e521f953a5451988459ba162d">payload_type</a> payload)</td></tr>
@@ -550,8 +550,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a7bd50f9f7e2acd1ee2cf9e9c
 
 </div>
 </div>
-<a id="ac6d15263258d01f69f9db70a44db1855"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#ac6d15263258d01f69f9db70a44db1855">&#9670;&nbsp;</a></span>fill_in_zipcode_from_pos()</h2>
+<a id="a61765fd02422ce2596808b8d75c97b23"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a61765fd02422ce2596808b8d75c97b23">&#9670;&nbsp;</a></span>fill_in_zipcode_from_pos()</h2>
 
 <div class="memitem">
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@@ -572,7 +572,13 @@ <h2 class="memtitle"><span class="permalink"><a href="#ac6d15263258d01f69f9db70a
           <td class="paramkey"></td>
           <td></td>
           <td class="paramtype">bool&#160;</td>
-          <td class="paramname"><em>fill_in_decoder</em> = <code>true</code>&#160;</td>
+          <td class="paramname"><em>fill_in_decoder</em> = <code>true</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classhandlegraph_1_1HandleGraph.html">handlegraph::HandleGraph</a> *&#160;</td>
+          <td class="paramname"><em>graph_ptr</em> = <code>nullptr</code>&#160;</td>
         </tr>
         <tr>
           <td></td>

functions_f.html

@@ -180,7 +180,7 @@ <h3><a id="index_f"></a>- f -</h3><ul>
 : <a class="el" href="classvg_1_1ZipCode.html#a80560ef71e77da7b85129278a46675ce">vg::ZipCode</a>
 </li>
 <li>fill_in_zipcode_from_pos()
-: <a class="el" href="classvg_1_1ZipCode.html#ac6d15263258d01f69f9db70a44db1855">vg::ZipCode</a>
+: <a class="el" href="classvg_1_1ZipCode.html#a61765fd02422ce2596808b8d75c97b23">vg::ZipCode</a>
 </li>
 <li>fill_matrix()
 : <a class="el" href="classvg_1_1BandedGlobalAligner_1_1BAMatrix.html#a54be0f91b1460bbd03e87e6da6be6e32">vg::BandedGlobalAligner&lt; IntType &gt;::BAMatrix</a>

functions_func_f.html

@@ -117,7 +117,7 @@ <h3><a id="index_f"></a>- f -</h3><ul>
 : <a class="el" href="classvg_1_1ZipCode.html#a80560ef71e77da7b85129278a46675ce">vg::ZipCode</a>
 </li>
 <li>fill_in_zipcode_from_pos()
-: <a class="el" href="classvg_1_1ZipCode.html#ac6d15263258d01f69f9db70a44db1855">vg::ZipCode</a>
+: <a class="el" href="classvg_1_1ZipCode.html#a61765fd02422ce2596808b8d75c97b23">vg::ZipCode</a>
 </li>
 <li>fill_matrix()
 : <a class="el" href="classvg_1_1BandedGlobalAligner_1_1BAMatrix.html#a54be0f91b1460bbd03e87e6da6be6e32">vg::BandedGlobalAligner&lt; IntType &gt;::BAMatrix</a>

search/all_6.js

@@ -81,7 +81,7 @@
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-<tr class="memitem:a2baea5938fa1a9b70e6a27ccc59c65d9"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="vg__environment__version_8hpp.html#a2baea5938fa1a9b70e6a27ccc59c65d9">VG_BUILD_HOST</a>&#160;&#160;&#160;&quot;runner-8apr64d7j-project-4-concurrent-0&quot;</td></tr>
+<tr class="memitem:a2baea5938fa1a9b70e6a27ccc59c65d9"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="vg__environment__version_8hpp.html#a2baea5938fa1a9b70e6a27ccc59c65d9">VG_BUILD_HOST</a>&#160;&#160;&#160;&quot;runner-jqc6opwmy-project-4-concurrent-0&quot;</td></tr>
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 <h2 class="groupheader">Macro Definition Documentation</h2>
@@ -92,7 +92,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a2baea5938fa1a9b70e6a27cc
 <div class="memproto">
       <table class="memname">
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-          <td class="memname">#define VG_BUILD_HOST&#160;&#160;&#160;&quot;runner-8apr64d7j-project-4-concurrent-0&quot;</td>
+          <td class="memname">#define VG_BUILD_HOST&#160;&#160;&#160;&quot;runner-jqc6opwmy-project-4-concurrent-0&quot;</td>
         </tr>
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search/functions_6.js

@@ -75,7 +75,7 @@
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="define-members"></a>
 Macros</h2></td></tr>
-<tr class="memitem:a5df50394a80dec8f6151eb57db04a38a"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="vg__git__version_8hpp.html#a5df50394a80dec8f6151eb57db04a38a">VG_GIT_VERSION</a>&#160;&#160;&#160;&quot;v1.71.0-65-g2e664f07e&quot;</td></tr>
+<tr class="memitem:a5df50394a80dec8f6151eb57db04a38a"><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="vg__git__version_8hpp.html#a5df50394a80dec8f6151eb57db04a38a">VG_GIT_VERSION</a>&#160;&#160;&#160;&quot;v1.71.0-71-g585d71ab2&quot;</td></tr>
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 <h2 class="groupheader">Macro Definition Documentation</h2>
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 <div class="memproto">
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-          <td class="memname">#define VG_GIT_VERSION&#160;&#160;&#160;&quot;v1.71.0-65-g2e664f07e&quot;</td>
+          <td class="memname">#define VG_GIT_VERSION&#160;&#160;&#160;&quot;v1.71.0-71-g585d71ab2&quot;</td>
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