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Hi, thanks for this super modular workflow!
Looking at `workflows/giraffe_and_deepvariant.wdl and the imported tasks/deepvariant.wdl I found that it uses the standard deepvariant not the pangenome-aware one.
Line 22 in e230f8c
| String in_dv_container = "google/deepvariant:1.8.0" |
Line 234 in e230f8c
| String in_dv_gpu_container = "google/deepvariant:1.8.0-gpu" |
I am not sure if this is intentional, but the pangenome-aware is at google/deepvariant:pangenome_aware_deepvariant-1.8.0 and google/deepvariant:pangenome_aware_deepvariant-1.8.0-gpu
Thanks,
—Mo
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