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Current workflow's DeepVariant is not pangenome-aware

Status: Open.

#157 In vgteam/vg_wdl;

· mr-eyes opened on Oct 28, 2025

Feature Request: giraffe mapping of CRAMs with multiple RGs

Status: Open.

#151 In vgteam/vg_wdl;

· jjfarrell opened on Jan 28, 2025

samtools collate fails when /tmp runs out of disk space

Status: Open.

#148 In vgteam/vg_wdl;

· benjschiller opened on May 7, 2024

Old Docker images incompatible with Singularity v4.0.3

Status: Open.

#147 In vgteam/vg_wdl;

· stxue1 opened on Feb 3, 2024

giraffe.wdl run failed with "ERROR task indexReference"

Status: Open.

#146 In vgteam/vg_wdl;

· gsc74 opened on Jan 24, 2024

Question about pangenome files

Status: Open.

#142 In vgteam/vg_wdl;

· mariyeta opened on Jun 5, 2023

Reporting slowness of local miniwdl run

Status: Open.

#140 In vgteam/vg_wdl;

· pichuan opened on Mar 30, 2023

Synchronize indexes with <code>vg autoindex</code>, or provide an indexing WDL

Status: Open.

#139 In vgteam/vg_wdl;

· adamnovak opened on Nov 21, 2022

repo-wide WDL conventions

Status: Open.

#12 In vgteam/vg_wdl;

· mlin opened on Mar 25, 2019

CI connecting vg_construct_and_index and vg_multicall

Status: Open.

#10 In vgteam/vg_wdl;

· mlin opened on Mar 25, 2019

Example WGS VG workflow not compatible with wdl version 1.0

Status: Open.

#6 In vgteam/vg_wdl;

· cmarkello opened on Mar 1, 2019

WDL requires Docker images on dockerhub

Status: Open.

#1 In vgteam/vg_wdl;

· edawson opened on Jan 30, 2019