Skip to content

Bump nf-core/setup-nextflow from 2 to 3#126

Open
dependabot[bot] wants to merge 1 commit into
mainfrom
dependabot/github_actions/nf-core/setup-nextflow-3
Open

Bump nf-core/setup-nextflow from 2 to 3#126
dependabot[bot] wants to merge 1 commit into
mainfrom
dependabot/github_actions/nf-core/setup-nextflow-3

Conversation

@dependabot
Copy link
Copy Markdown
Contributor

@dependabot dependabot Bot commented on behalf of github Apr 17, 2026

Bumps nf-core/setup-nextflow from 2 to 3.

Release notes

Sourced from nf-core/setup-nextflow's releases.

v3.0.0

Breaking Change

  • Upgraded Node.js version from 20 to 24 (#219)

Added

  • secrets input to set Nextflow secrets (KEY=VALUE format, one per line) (#202)
  • Test to verify /dist is up-to-date
  • Pull request template
  • Contributing documentation

Changed

  • Updated ESLint to v9 with flat config format
  • Migrated codebase to ES Modules (ESM)
  • Simplified action.yml by flattening the composite action structure
Changelog

Sourced from nf-core/setup-nextflow's changelog.

[3.0.0] - 2024-04-17

Breaking Change

  • Upgraded Node.js version from 20 to 24 (#219)

Added

  • secrets input to set Nextflow secrets (KEY=VALUE format, one per line) (#202)
  • Test to verify /dist is up-to-date
  • Pull request template
  • Contributing documentation

Changed

  • Updated ESLint to v9 with flat config format
  • Migrated codebase to ES Modules (ESM)
  • Simplified action.yml by flattening the composite action structure

[2.1.4] - 2024-12-05

  • Fix ref handling in nested GitHub Actions

[2.1.3] - 2024-12-05

  • remove unnecessary build step

[2.1.2] - 2024-12-05

  • Fix checkout step in main action.yml

[2.1.1] - 2024-12-05

  • Don't print nextflow help output by default, only on debug mode (#173)

[2.1.1] - 2024-12-05

  • Add checkout step to main action.yml (#178)

[2.1.0] - 2024-12-04

Changed

  • Action now installs Java by default and can be configured via the new java-version and java-distribution inputs (#177)

[2.0.0] - 2024-03-01

Added

  • renovate dependency automation bot (#41)

... (truncated)

Commits
  • b4ec1bc bump to 3.0.0
  • 9c26865 chore(deps): lock file maintenance (#215)
  • d363500 chore(deps): update dependency eslint-plugin-simple-import-sort to v13 (#223)
  • ef07cf4 chore(deps): update dependency ava to v7 (#218)
  • 5e163de chore(deps): replace dependency @​tsconfig/node20 with @​tsconfig/node22 (#210)
  • d7409ea chore(deps): update dependency prettier to v3.8.2 (#224)
  • e6f6dd3 add nextflow secret as optional input (#222)
  • 565556e chore(deps): update dependency @​actions/github to v9.1.0
  • b16a743 chore(deps): update typescript-eslint monorepo to v8.58.1
  • 2337acd chore(deps): update dependency c8 to v11 (#216)
  • Additional commits viewable in compare view

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Bumps [nf-core/setup-nextflow](https://github.com/nf-core/setup-nextflow) from 2 to 3.
- [Release notes](https://github.com/nf-core/setup-nextflow/releases)
- [Changelog](https://github.com/nf-core/setup-nextflow/blob/master/CHANGELOG.md)
- [Commits](nf-core/setup-nextflow@v2...v3)

---
updated-dependencies:
- dependency-name: nf-core/setup-nextflow
  dependency-version: '3'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Apr 17, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code

Projects

None yet

Development

Successfully merging this pull request may close these issues.

0 participants