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Data transformers#3

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AlexPatrie wants to merge 59 commits intomasterfrom
data-transformers
Open

Data transformers#3
AlexPatrie wants to merge 59 commits intomasterfrom
data-transformers

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@AlexPatrie
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What does this PR do?:

  • Adds bulk, genes, reactions and labkey analysis modules in new data_transform analysis subpackage in ecoli.analysis.data_transform
  • Adds corresponding analysis configs for running data transformations. Beside the ability to be run separately as analysis workflows/jobs, these specifications can also be included directly in the configuration for the simulation run itself.
  • Adds a transform subpackage in ecoli.library containing a DataTransformer ABC handler interface, allowing for seamless onboarding of new data transformations.

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