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feat(train): checkpoint and restore per-rank RNG state for exact resume - #1026

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feat(train): checkpoint and restore per-rank RNG state for exact resume#1026
zihanlin-ai wants to merge 8 commits into
vllm-project:mainfrom
zihanlin-ai:feat/checkpoint-rng-state

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@zihanlin-ai zihanlin-ai commented Aug 21, 2026

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Purpose

Mid-epoch resume restores the data position, optimizer and scheduler, but not torch RNG state. Accelerator-side anchor sampling, noise augmentation and dropout therefore diverge after resume.

Save the torch CPU and current accelerator RNG state in one per-rank file. Mid-epoch state is captured at checkpoint time; end-of-epoch state is captured after validation and any --save-best update. On resume, it is restored after creating the existing-epoch iterator for a mid-epoch checkpoint and before creating the next-epoch iterator at an epoch boundary. Checkpoints without an RNG file still resume with a warning.

This covers torch RNG only. Exact replay requires --num-workers 0, the same rank/device topology, and the remaining checkpoint guarantees discussed in #1027.

Implements #1027.

Tests

Unit (tests/unit/train/test_mid_epoch_resume.py, 14 tests): snapshot format / weights_only load; end-of-epoch snapshot written after validation; --save-best checkpoints get it; a live iterator that continues vs. a fresh process that resumes mid-epoch, with a dataset that draws on every fetch; the same at an epoch boundary; per-rank files under the distributed rank gate; missing-file fallback.

Hardware, on this branch + #899 (fp32 optimizer state) + #900 (scheduler seeding) with model weights serialized as fp32 — a tiny model with dropout, AdamW, 10 steps/epoch, crash after the mid-epoch checkpoint, then resume in a fresh process and compare against the uninterrupted run:

  • H20, torch 2.9.0+cu129 — single process: mid-epoch, end-of-epoch and save_best resumes bitwise identical (loss per step, final params, optimizer state); 2-rank DDP (NCCL): both ranks bitwise identical after resume, one RNG file per rank.
  • Ascend A3, torch 2.9.0 + torch_npu 2.9.0.post6 — same results (HCCL for the 2-rank case).
  • With the upstream default bf16 weight serialization the resumed run diverges at its first step on both devices, independent of this PR (see [RFC]: Checkpoint and restore RNG state so a resumed run reproduces the uninterrupted run #1027).
$ python -m pytest tests/unit/train/test_mid_epoch_resume.py -q
14 passed
$ ruff check && ruff format --check && mdformat --check docs/cli/train.md && mypy --check-untyped-defs src/speculators/train/trainer.py tests/unit/train/test_mid_epoch_resume.py
All checks passed!

Checklist

  • The purpose of the PR is described.
  • The test plan and results are provided.
  • (Optional) The necessary documentation update.
  • I (a human) have written or reviewed the code in this PR to the best of my ability.

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📝 Walkthrough

Walkthrough

Changes

The trainer now saves and restores per-rank torch CPU and device RNG state during checkpoint resume. Mid-epoch and end-of-epoch checkpoints use different snapshot timings. Tests verify exact replay and missing-state handling. CLI documentation describes these rules.

Deterministic checkpoint resume

Layer / File(s) Summary
RNG state management
src/speculators/train/trainer.py
The trainer collects, saves, loads, and applies per-rank CPU and device RNG state. Resume loads the pending state before epoch iteration and clears it after application.
Checkpoint lifecycle integration
src/speculators/train/trainer.py
Mid-epoch checkpoints save RNG state immediately. End-of-epoch and best checkpoints defer the snapshot until after validation.
Resume validation and documentation
tests/unit/train/test_checkpoint.py, tests/unit/train/test_mid_epoch_resume.py, docs/cli/train.md
Tests cover RNG files, exact replay, missing RNG state, iterator creation, and distributed barriers. The CLI documentation describes checkpoint RNG state and the --num-workers 0 requirement for exact replay.

Merge Risk: 🟡 Moderate · up to 667bb

For samplers without fast-skip support, replaying skipped batches can consume random values before the saved state is restored, causing resumed training to diverge from an uninterrupted run. This bounded correctness issue should be fixed and covered by a regression test before merging.

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 45.45% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 33 functions across 3 files. (1 skipped: … Write docstrings for the functions missing them to satisfy the coverage threshold.
✅ Passed checks (4 passed)
Check name Status Explanation
Title check ✅ Passed The title clearly and concisely describes the main change: saving and restoring per-rank RNG state during training resume.
Description check ✅ Passed The description directly explains the RNG checkpointing behavior, resume ordering, compatibility limits, tests, and validation results for this changeset.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.
Full details: Docstring Coverage

Explanation

Docstring coverage is 45.45% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 33 functions across 3 files. (1 skipped: 1 unsupported.)

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@mergify mergify Bot added the documentation Improvements or additions to documentation label Aug 21, 2026
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@zihanlin-ai
zihanlin-ai force-pushed the feat/checkpoint-rng-state branch 2 times, most recently from 75cdf8b to 215a64b Compare August 21, 2026 16:19
Mid-epoch resume (vllm-project#603) restores the data position, the optimizer and the
scheduler, but not the random number generators. Anchor sampling
(torch.randperm on the accelerator), noise augmentation and dropout keep
drawing from wherever the fresh process happens to start, so a resumed run
diverges from the uninterrupted one even with --num-workers 0, and
interrupted/uninterrupted runs cannot be compared step for step.

Every rank now writes rng_state_rank{N}.pt next to each integer-epoch
checkpoint (Python, NumPy, torch CPU and the rank's accelerator generator,
stored as primitives/tensors so it loads with weights_only=True). On resume
the state is loaded in setup_trainer and applied once in train_epoch, after
the fast-skip has been prepared and before the loader iterator draws its
base seed, so the first resumed step sees exactly the generators the
checkpoint saw. Checkpoints without the file resume with a warning.

Tests cover the snapshot format, exact replay of torch/Python/NumPy draws
across a mid-epoch resume, end-of-epoch resume, per-rank files under the
distributed rank gate, and the missing-file fallback.

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
…best

Review feedback on the first revision found two real gaps:

- Restore ordering. A mid-epoch checkpoint is taken while the epoch's
  DataLoader iterator is alive; the resumed process creates a new iterator,
  which draws the loader base seed from the CPU generator. Restoring the
  snapshot before that draw left the resumed run one draw behind the
  uninterrupted one (reproduced with num_workers=0). The previous test hid
  this by recreating the iterator on the reference side as well. The
  snapshot is now applied after the resumed iterator exists for mid-epoch
  resume, and before it for end-of-epoch resume (_epoch_iterator), and the
  tests compare a live iterator that continues against a fresh process that
  resumes, with a dataset that draws on every fetch.

- save_best=True. maybe_save_checkpoint returns early under save_best and
  the checkpoint is written by maybe_update_best, which never saved the RNG
  state. End-of-epoch snapshots are now taken once at the end of the epoch
  loop, after validation and the best-checkpoint update, for whichever path
  wrote the checkpoint, which is also the point an uninterrupted run would
  continue from (validation draws included). Mid-epoch checkpoints keep the
  snapshot at save time.

Every rank's write is followed by a barrier in distributed mode so a
checkpoint is not visible as resumable before all rank files exist.

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
@zihanlin-ai
zihanlin-ai force-pushed the feat/checkpoint-rng-state branch from 462425b to e49e3dd Compare August 22, 2026 05:11
Review: keep the change minimal. The trainer's own random draws (anchor
sampling, noise augmentation, dropout) all come from torch generators, so
the snapshot now holds the torch CPU generator and this rank's accelerator
generator only; Python random and NumPy state are left out until something
in the training step draws from them. Tests and docs updated accordingly.

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
Review: a missing or unreadable RNG file and a failed restore no longer
warn-and-continue; only the missing-file case (checkpoints predating this
change) is tolerated, anything else raises. Resolve the device module via
torch.get_device_module and gate on torch.accelerator.is_available()
instead of getattr/hasattr probing. Fold the consumed-once assertion into
the existing mid-epoch resume test.

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
…ady None)

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>

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Actionable comments posted: 1

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Inline comments:
In `@src/speculators/train/trainer.py`:
- Around line 267-274: Update _epoch_iterator to restore the pending RNG state
after fallback replay skips skip_steps batches, before remaining batches are
processed; preserve the existing ordering for samplers supporting fast skip, and
add a regression test using _NoisyDataset with a sampler lacking fast-skip
support.
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Comment thread src/speculators/train/trainer.py

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Reviewed commit: 667bb2eb33

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Comment thread src/speculators/train/trainer.py
…poch snapshot

With checkpoint_freq < 1, a mid-epoch checkpoint writes rng_state_rank*.pt
into the same epoch directory the end-of-epoch save reuses. The
end-of-epoch snapshot is deferred until validation finishes, so in that
window the directory holds end-of-epoch weights next to mid-epoch RNG
state; a resume after an interruption during validation would silently
replay mid-epoch random draws. Remove this rank's RNG file at both
deferral sites so such a resume falls back to the documented no-RNG
warning instead.

Raised by review on the PR.

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
…n fallback resume

When the sampler lacks the fast-skip API, _epoch_iterator returned the
loader from batch 0: the training loop retrained the already-trained
batches under shifted local_step numbering, and the RNG snapshot was
applied before the replay, so with num_workers=0 the replayed
__getitem__ calls consumed the freshly restored stream and every
remaining batch drew from the wrong position. Fetch and discard the
skipped batches first, then apply the snapshot - the drained calls
consume random draws exactly as the original epoch did, training never
sees them, and local_step stays aligned with the full epoch. Fast-skip
samplers keep the existing order (restore right after iterator
creation, nothing to drain).

The trainer mocks in test_mid_epoch_resume now route through the real
_prepare_resume_skip instead of reimplementing it, so they exercise the
replay flag and the sampler slice rather than a parallel copy.

Raised by review on the PR.

Signed-off-by: Zihan Lin <linzihan.ai@gmail.com>
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