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CliqueSNV 2.0 severely overestimates haplotype frequency

Status: Open.

#31 In vtsyvina/CliqueSNV;

· YangJingqii opened on Dec 19, 2025

Safer - Compatible Updates to Fix Vulnerable Dependencies

Status: Open.

#30 In vtsyvina/CliqueSNV;

· safer-bot opened on Jul 16, 2025

snv with nanopore input

Status: Open.

#25 In vtsyvina/CliqueSNV;

· antoine4ucsd opened on Nov 15, 2022

Error with cliqueSNV

Status: Open.

#22 In vtsyvina/CliqueSNV;

· pamelacamejom opened on Sep 23, 2022

-t and -tf parameters

Status: Open.

#21 In vtsyvina/CliqueSNV;

· AndreaAguadoM opened on Jun 17, 2022

Potential bug when specifying -threads with 1?

Status: Open.

#19 In vtsyvina/CliqueSNV;

· niemasd opened on Apr 12, 2022

No variants called in any haplotype when SNV is not in linkage with other SNVs?

Status: Open.

#18 In vtsyvina/CliqueSNV;

· AdmiralenOla opened on Mar 25, 2022

T parameter help

Status: Open.

#16 In vtsyvina/CliqueSNV;

· gianfilippo opened on Jan 20, 2022

UMI Nanopore Amplicons

Status: Open.

#3 In vtsyvina/CliqueSNV;

· chrisLanderson opened on May 2, 2020