tests: added test for fhir data extractions #12

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python Package Test and Lint

	on:
	push:
	branches: ["*"]
	paths:
	- "src/**"
	- ".isort.cfg"
	- ".flake8"
	- "pytest.ini"
	- "mypy.ini"
	- "tests/**"
	- "pyproject.toml"
	pull_request:
	branches: ["main"]
	paths:
	- "src/**"
	- ".isort.cfg"
	- ".flake8"
	- "pytest.ini"
	- "mypy.ini"
	- "tests/**"
	- "pyproject.toml"

	permissions:
	contents: read

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.10
	uses: actions/setup-python@v4
	- name: Install poetry
	uses: abatilo/actions-poetry@v2
	- name: Setup a local virtual environment (if no poetry.toml file)
	run: \|
	poetry config virtualenvs.create true --local
	poetry config virtualenvs.in-project true --local
	- uses: actions/cache@v3
	name: Define a cache for the virtual environment based on the dependencies lock file
	with:
	path: ./.venv
	key: venv-${{ hashFiles('poetry.lock') }}
	- name: Install the project dependencies
	run: poetry install
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	poetry run pytest -m fhirapi

Provide feedback