Check out the westpa tutorial hub at https://github.com/westpa/tutorials for the most up-to-date files for the LiveCoMS paper. The pdf is located at this link: https://github.com/westpa/tutorials/blob/main/paper/CombinedSuiteofWESTPATutorials.pdf.
This repository has been reorganized. Go to the westpa2 branch if you want the older organization.