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adding option to define first and last fovs for conversion #5

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adding option to define first and last fovs for conversion #5

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5 changes: 4 additions & 1 deletion starfish/core/experiment/builder/builder.py
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Original file line number Diff line number Diff line change
Expand Up @@ -315,6 +315,7 @@ def write_experiment_json(
fov_path_generator: Optional[Callable[[Path, str], Path]] = None,
tile_opener: Optional[Callable[[Path, Tile, str], BinaryIO]] = None,
writer_contract: Optional[WriterContract] = None,
fov_start: Optional[int] = 0,
) -> None:
"""
Build and returns a top-level experiment description with the following characteristics:
Expand All @@ -325,6 +326,8 @@ def write_experiment_json(
Directory to write the files to.
fov_count : int
Number of fields of view in this experiment.
fov_start : int
Starting field of view for conversion in this experiment.
tile_format : ImageFormat
File format to write the tiles as.
primary_image_dimensions : Mapping[Union[str, Axes], int]
Expand Down Expand Up @@ -396,7 +399,7 @@ def write_experiment_json(
)
image_tile_identifiers[image_type] = [
TileIdentifier(fov_id, selector[Axes.ROUND], selector[Axes.CH], selector[Axes.ZPLANE])
for fov_id in range(fov_count)
for fov_id in range(fov_start,fov_count)
for selector in ordered_iterator(axes_sizes)
]

Expand Down