Software Packages Used in My Projects

This repository documents the neuroimaging software packages I have used throughout my research journey. Some remain essential tools in my current workflow, while others have been retired as my needs evolved. I would like to express my sincere gratitude to all the scientists and developers who made these free and open-source software packages available to the research community.

Still in Use

AFNI | AMICO | ANTs | BrainNet-Viewer | BrainSMASH | CAT | ComBat | Convert3D | dcm2niix | FreeSurfer | fsbrain | FSL | ggseg | HCPpipelines | ITK-SNAP | MRtrix | PALM | RegistrationFusion | SPM | SynDisCo

No Longer in Use

abagen | CCS | DPABI | freesurfer_statsurf_display | GIFT | GingerALE | gRAICAR | GRETNA | ICA-AROMA | Icasso | LQT | MRIcroGL | MRIcron | NBS | NODDI | PANDA | PhiPipe | SDM | SimTB | SUIT | SurfIce | TrackVis | volBrain | xjView