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yttria-aniseia / HiFi-human-WGS-editing-QC-WDL Public

forked from PacificBiosciences/HiFi-human-WGS-WDL

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April fixes#23

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yttria-aniseia wants to merge 9 commits intomainyttria-aniseia/HiFi-human-WGS-editing-QC-WDL:mainfrom

april-fixesyttria-aniseia/HiFi-human-WGS-editing-QC-WDL:april-fixesCopy head branch name to clipboard

Conversation Commits9 (9)Checks Files changed

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April fixes#23
yttria-aniseia wants to merge 9 commits intomainfrom
april-fixes

Commits

Commits on Apr 17, 2026

feat: crispr edit schema include optional donor context outside homology arms
yttria-aniseia
committed
feat: revamp on-target outcome classification (blast queries, error correction, MSA consensus)
yttria-aniseia
committed
fix(knock_knock): avoid crash on short sequences with no alignment found
yttria-aniseia
committed
feat(loh): output loh bedgraph for entire edit chromosome, not just cut site vicinity
yttria-aniseia
committed

Commits on May 1, 2026

perf: maybe slightly faster input bam staging
yttria-aniseia
committed
fix: reheader pav VCFs to avoid losing pav SVs
yttria-aniseia
committed
variant quality filter step
yttria-aniseia
committed
fix: pass inputs for INFO/parent annot, adjust some resource requests to reduce stampede
yttria-aniseia
committed
fix: adjust consensus MSA params to behave better with expected ins gap
yttria-aniseia
committed

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