Fix CI workflow action version and resolve module import errors

[Copilot]

Two workflows failing: CI using non-existent google/osv-scanner-action@v1, and Python tests failing with ModuleNotFoundError: No module named 'modules'.

Changes

• CI workflow: Updated OSV scanner from @v1 to @v1.9.0 in .github/workflows/ci.yml

• Module structure: Created modules/ package matching existing imports in app.py

  • Moved thinker.py, mrq.py, alga.py, deepsearch.py, providers.py → modules/
  • Added modules/__init__.py

• Rate limiter fix: Decorator was breaking FastAPI's signature introspection

  • Added @functools.wraps to preserve function metadata
  • Handle both sync and async endpoint functions with inspect.iscoroutinefunction

The rate limiter issue surfaced once tests could run (previously blocked by import errors). Without @functools.wraps, FastAPI treated the wrapper's *args, **kwargs as query parameters, causing 422 errors.

# Before: FastAPI couldn't see original function signature
async def wrapper(*args, **kwargs):
    # ...

# After: Preserves original function for FastAPI introspection  
@functools.wraps(func)
async def wrapper(*args, **kwargs):
    if inspect.iscoroutinefunction(func):
        return await func(*args, **kwargs)
    else:
        return func(*args, **kwargs)

Warning

Firewall rules blocked me from connecting to one or more addresses (expand for details)

I tried to connect to the following addresses, but was blocked by firewall rules:

• duckduckgo.com
  • Triggering command: /usr/bin/python python -m pytest -v (dns block)

If you need me to access, download, or install something from one of these locations, you can either:

• Configure Actions setup steps to set up my environment, which run before the firewall is enabled
• Add the appropriate URLs or hosts to the custom allowlist in this repository's Copilot coding agent settings (admins only)

Original prompt

Fix Failing CI and Python Application Workflows

Problem Summary

Two workflows are currently failing in the AutoserGPT-T1 repository:

Issue 1: CI Workflow Failure (.github/workflows/ci.yml)

Error:

##[error]Unable to resolve action `google/osv-scanner-action@v1`, unable to find version `v1`

Root Cause: The google/osv-scanner-action@v1 version does not exist or is unavailable.

Solution: Update line 34 in .github/workflows/ci.yml from:

uses: google/osv-scanner-action@v1

to:

uses: google/osv-scanner-action@v1.9.0

Issue 2: Python Application Workflow Failure (.github/workflows/python-app.yml)

Error:

ModuleNotFoundError: No module named 'modules'
E   app.py:5: in <module>
E       from modules.thinker import thinker_run

Root Cause: The app.py file imports from a modules package:

• from modules.thinker import thinker_run
• from modules.mrq import mrq_review
• from modules.alga import alga_run
• from modules.deepsearch import fetch_and_summarize
• from modules.providers import call_model

However, these files exist at the root level of the repository (not in a modules/ directory):

• thinker.py
• mrq.py
• alga.py
• deepsearch.py
• providers.py

Solution: Create a modules/ directory structure and reorganize the code:

1. Create modules/ directory

2. Create modules/__init__.py (empty file to make it a Python package)

3. Move the following files into modules/:

   • thinker.py → modules/thinker.py
   • mrq.py → modules/mrq.py
   • alga.py → modules/alga.py
   • deepsearch.py → modules/deepsearch.py
   • providers.py → modules/providers.py

4. Update any cross-imports within the moved files to use relative imports or modules.* format

Expected Outcome

• ✅ CI workflow passes with updated OSV scanner action
• ✅ Python application workflow passes with all tests collecting and running properly
• ✅ All import errors resolved
• ✅ Code structure matches the import statements in app.py

Testing

After changes, both workflows should run successfully on push to main branch.

This pull request was created from Copilot chat.

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[zubinqayam]

APPROVED 0021