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Installing the Single Cell Debarcoder
krisf93 edited this page Mar 22, 2017
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The Single Cell Debarcoder (SCD) for mass cytometry data is distributed as a standalone MATLAB application. That means that it requires installing the MATLAB Compiler Runtime (MCR), but an installation or license for MATLAB itself is not required. It is important to install corresponding releases of the MCR and the Normalizer; v0.2 of the Normalizer requires
- MCR Release R2015b (9.0) for Mac OSX
- MCR Release R2013a (8.1) for 64-bit Windows
The SCD is available here.
Simply download and unzip the version corresponding to your operating system. You are now ready to debarcode FCS files.
Download the source code. To run the debarcoder, at the prompt type
>> single_cell_debarcode_gui
You are now ready to debarcode FCS files.