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Move simulation code to subpackage

refactoring

Status: Open.

#3041 In AMICI-dev/AMICI;

· dweindl opened on Nov 15, 2025

· 

v1.0.0 remove matlab code, enable compilation of matlab models through python

Move symbolic model code to subpackage

refactoring

Status: Open.

#3040 In AMICI-dev/AMICI;

· dweindl opened on Nov 15, 2025

· 

v1.0.0 remove matlab code, enable compilation of matlab models through python

PySB import: Replace all PySB objects by plain sympy objects when creating the DEModel

PySBPySB import relatedPySB import related

refactoring

Status: Open.

#3035 In AMICI-dev/AMICI;

· dweindl opened on Nov 14, 2025

amici._get_commit_hash does not work with git worktree

Status: Open.

#3034 In AMICI-dev/AMICI;

· dweindl opened on Nov 14, 2025

Fix building model extensions under conda on macos

bug

Status: Open.

#3028 In AMICI-dev/AMICI;

· dweindl opened on Nov 12, 2025

Let <code>Model::froot</code> depend on <code>w</code>

bug

c++

performance

python

Status: Open.

#3022 In AMICI-dev/AMICI;

· dweindl opened on Nov 11, 2025

Replace version.txt by setuptools-scm

Status: Open.

#3016 In AMICI-dev/AMICI;

· dweindl opened on Nov 4, 2025

doc: Exclude private API

documentation

Status: Open.

#3008 In AMICI-dev/AMICI;

· dweindl opened on Nov 2, 2025

Dynamic linking of amici-core

performance

Status: Open.

#2955 In AMICI-dev/AMICI;

· dweindl opened on Oct 2, 2025

Document release process

documentation

Status: Open.

#2942 In AMICI-dev/AMICI;

· dweindl opened on Aug 26, 2025

Mismatch in parameter size following equilibration failure

bug

Status: Open.

#2935 In AMICI-dev/AMICI;

· FFroehlich opened on Jul 31, 2025

Fix handling of != and == in event triggers

bug

eventsrelated to handing discrete eventsrelated to handing discrete events

Status: Open.

#2912 In AMICI-dev/AMICI;

· dweindl opened on Jul 18, 2025