v25.04

What's Changed

• Update AMReX for SyCL bug fix by @jrood-nrel in #605
• Specify clang-tidy config file location by @jrood-nrel in #606
• Update PelePhysics and AMReX by @jrood-nrel in #609
• Landon/add spray post func by @ldowen in #615
• Update amrex-hydro by @marchdf in #619
• Update PelePhysics and AMReX by @jrood-nrel in #612
• Rogue omp pragma near new ParallelFor by @baperry2 in #620
• Add runtime Diagnostics added to PelePhysics by @esclapez in #616
• Add a 'coordinate' derived var. by @esclapez in #623
• Simplify spray data by @ldowen in #629
• Simplify move transport to ec by @marchdf in #632
• Simplify diffusion flux calls by removing need for sparse EB struct by @marchdf in #631
• Fix some postprocessing by @marchdf in #635
• Skip covered cells for transport coeff calc by @marchdf in #637
• Add documentation of flag for EB checkpoint reading by @marchdf in #639
• Make tangential velocity weights const on gpu instead of thread private by @marchdf in #640
• Update PelePhysics by @baperry2 in #630
• Plt restart bug by @baperry2 in #645
• Reorganize MOL file by @marchdf in #636
• Add cavity flame case by @jrood-nrel in #649
• Fix flux factor multiplication by @marchdf in #650
• Redistribution move by @baperry2 in #647
• Fix the if condition on the fillpatcher reset by @marchdf in #651
• Fix static diag vector memory leak by @marchdf in #652
• Remove sort in init EB and increase parallelism by @marchdf in #644
• Update Intel OneAPI CI by @jrood-nrel in #653
• Update PeleMP submodule by @ldowen in #646
• Update PelePhysics to fix SUNDIALS directory detection by @jrood-nrel in #654
• Try to use older version of cppcheck by @jrood-nrel in #655
• Consolidate flux register calculation into one place by @marchdf in #657
• Consolidate into a post redist function by @marchdf in #658
• Reorg some hydro routines by @marchdf in #660
• add BC checks in Godunov cmpflx by @baperry2 in #662
• Remove track grid loses by @marchdf in #661
• Add ccache stuff by @jrood-nrel in #659
• Clang tidy fixes by @marchdf in #667
• Add in some more infrastructure for EB godunov by @marchdf in #663
• Add Re-redistribution by @marchdf in #664
• Test ccache by @jrood-nrel in #666
• Try using managed memory for fcompare by @jrood-nrel in #669
• Change bcnormal interface to allow for better reflections at walls by @baperry2 in #665
• Add plm iorder flag back to PLM by @marchdf in #668
• Revert "Try using managed memory for fcompare" by @jrood-nrel in #670
• Update docs and remove fortran references and code by @marchdf in #672
• Introduce mol_iorder flag by @marchdf in #671
• Fix MassCons nightly test by @baperry2 in #674
• Add pipefail to CI. Update AMReX. by @jrood-nrel in #675
• Suppress lto-wrapper warning in CI by @jrood-nrel in #676
• Reduce order at user BCs for Godunov by @baperry2 in #673
• Fix datlog and update amrex by @marchdf in #677
• Update tags with the use of iv and pass in ebflag by @marchdf in #678
• Revert amrex update by @marchdf in #681
• Fix reflux factor for MOL by @marchdf in #679
• Make the tagging aware of EBs by @marchdf in #682
• Update gitignore by @marchdf in #683
• Fix re-redistribution by @marchdf in #680
• Use sundials submodule for make TPL by @jrood-nrel in #686
• Isothermal domain bc by @baperry2 in #684
• Update citations by @marchdf in #687
• Update submods by @marchdf in #688
• Update AMReX and PelePhysics by @jrood-nrel in #690
• Increase ghost cells for the level mask by @marchdf in #691
• Update submodules by @jrood-nrel in #693
• Bump setup python version by @marchdf in #694
• Add dependatbot by @marchdf in #695
• Change default to not use slopes in SRD for robustness by @baperry2 in #698
• Add codespell by @marchdf in #697
• Check for warnings in mechanisms by @jrood-nrel in #696
• Reproducibility for EB covered state by @baperry2 in #702
• Add ccache to clang-tidy by @jrood-nrel in #701
• Add isooctane_lu inputs for PMF case by @jrood-nrel in #705
• Fix derive for state variables with ghost cells by @baperry2 in #707
• Some improvements and testing for the EB covered state by @baperry2 in #704
• remove plt vars with nans from eb-c3 by @baperry2 in #708
• remove dependence of Filter on Utilities by @baperry2 in #710
• Add some PeleC options to the GNUmakefiles by @jrood-nrel in #709
• Regex clang tidy by @baperry2 in #711
• Remove filter files that will now live in PelePhysics by @baperry2 in #714
• remove google test entry in .gitmodules file by @baperry2 in #716
• Allow manual dispatch of CI workflow by @baperry2 in #720
• Update pelephysics submodule by @marchdf in #715
• Fix warnings in pelephysics by @marchdf in #723
• Don't do FPE checking on MacOS by @jrood-nrel in #727
• abort on unused parmparse variables in input file in tests by @baperry2 in #725
• Add PeleMP cases for soot and spray by @marchdf in #724
• Update github cache cleanup by @jrood-nrel in #728
• Try using macos for more RAM when running clang-tidy by @jrood-nrel in #729
• Remove prob parm passing in spray by @marchdf in #730
• Bump Submodules/PelePhysics from b7d592f to 87f9706 by @dependabot in #734
• MD's xmas present: EB Godunov by @marchdf in #731
• Bump Submodules/PelePhysics from 87f9706 to 771ab82 by @dependabot in #740
• Minor tweak to EB-C7 by @marchdf in #742
• initialize diagnostics on restart by @baperry2 in #748
• Bump Submodules/PelePhysics from 771ab82 to e3f2077 by @dependabot in #750
• Fix Wunreachable-code by @marchdf in #757
• Fix BC Types due to breaking AMReX change by @baperry2 in https://github.com/A...