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Merged
merged 8 commits into from
Nov 6, 2025
Merged

rc/1.1.0 #94

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7a65444
bump version.
morriscb Nov 6, 2025
a7b3abb
Add consensus mouse notebooks.
morriscb Oct 10, 2025
d6b9d32
Add web pages.
morriscb Oct 24, 2025
65bcdd1
Update anatomical regions from parcellation terms
morriscb Oct 29, 2025
d75d2ac
Update directory names for release.
morriscb Oct 29, 2025
fb25054
New taxonomy run through with notebooks.
morriscb Nov 3, 2025
09d8a29
Merge branch 'u/morriscb/consensusMouse' into rc/1.1.0
morriscb Nov 6, 2025
5c9b82a
Rerun with release data bucket.
morriscb Nov 6, 2025
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190 changes: 190 additions & 0 deletions _static/Consensus-WMB-integrated-taxonomy/20251031/class.html
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53,790 changes: 53,790 additions & 0 deletions _static/Consensus-WMB-integrated-taxonomy/20251031/cluster.html
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44 changes: 44 additions & 0 deletions _static/Consensus-WMB-integrated-taxonomy/20251031/neighborhood.html
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<html>
<head><title>Consensus WMB integrated taxonomy: cell type neighborhood</title></head>
<link rel="stylesheet" type="text/css" href="../../simple_style.css"/>
<body>
<table border="1" class="dataframe mystyle">
<thead>
<tr style="text-align: right;">
<th>neighborhood</th>
</tr>
</thead>
<tbody>
<tr>
<td><div id="CS20251031_NEIGH_0003"></div><div class="circle" style="background-color:#FF6600"></div><div class="celltext">HY-EA-Glut-GABA</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0011">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0006"></div><div class="circle" style="background-color:#9EF01A"></div><div class="celltext">MB-GABA</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0021">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0004"></div><div class="circle" style="background-color:#006200"></div><div class="celltext">MB-Glut-Dopa-Sero</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0015">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0009"></div><div class="circle" style="background-color:#03045E"></div><div class="celltext">NN-IMN</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0036">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0008"></div><div class="circle" style="background-color:#0096C7"></div><div class="celltext">P-MY-CB-GABA</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0031">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0007"></div><div class="circle" style="background-color:#F0A0FF"></div><div class="celltext">P-MY-CB-Glut</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0024">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0001"></div><div class="circle" style="background-color:#FA0087"></div><div class="celltext">Pallium-Glut</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0001">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0002"></div><div class="circle" style="background-color:#B199FF"></div><div class="celltext">Subpallium-GABA</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0005">[+]</a></div></td>
</tr>
<tr>
<td><div id="CS20251031_NEIGH_0005"></div><div class="circle" style="background-color:#1283FF"></div><div class="celltext">TH-EPI-Glut</div><div class="celltext"><a href="class.html#CS20251031_CLAS_0018">[+]</a></div></td>
</tr>
</tbody>
</table>
</body>
</html>.

83 changes: 83 additions & 0 deletions _static/Consensus-WMB-integrated-taxonomy/20251031/neurotransmitter.html
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<html>
<head><title>Consensus WMB integrated taxonomy: cell type neurotransmitter</title></head>
<link rel="stylesheet" type="text/css" href="../../simple_style.css"/>
<body>
<table border="1" class="dataframe mystyle">
<thead>
<tr style="text-align: right;">
<th>neurotransmitter</th>
</tr>
</thead>
<tbody>
<tr>
<td><div id="CS20251031_NEUR_0002"></div><div class="circle" style="background-color:#FF3358"></div><div class="celltext">GABA</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0003"></div><div class="circle" style="background-color:#0a9964"></div><div class="celltext">Glut-GABA</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0025"></div><div class="circle" style="background-color:#66636C"></div><div class="celltext">NN</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0011"></div><div class="circle" style="background-color:#008080"></div><div class="celltext">GABA-Dopa</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0024"></div><div class="circle" style="background-color:#9189FF"></div><div class="celltext">GABA-Glyc</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0013"></div><div class="circle" style="background-color:#ff7621"></div><div class="celltext">GABA-Hist</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0001"></div><div class="circle" style="background-color:#2B93DF"></div><div class="celltext">Glut</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0009"></div><div class="circle" style="background-color:#FF4500"></div><div class="celltext">Glut-Dopa</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0022"></div><div class="circle" style="background-color:#1B9E77"></div><div class="celltext">Glut-Glyc</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0010"></div><div class="circle" style="background-color:#800080"></div><div class="celltext">Glut-GABA-Dopa</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0008"></div><div class="circle" style="background-color:#fcf04b"></div><div class="celltext">Dopa</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0020"></div><div class="circle" style="background-color:#fad502"></div><div class="celltext">Glut-GABA-Sero</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0018"></div><div class="circle" style="background-color:#377EB8"></div><div class="celltext">Glut-Sero</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0019"></div><div class="circle" style="background-color:#FF7080"></div><div class="celltext">GABA-Sero</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0017"></div><div class="circle" style="background-color:#533691"></div><div class="celltext">Sero</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0021"></div><div class="circle" style="background-color:#0000FF"></div><div class="celltext">Glyc</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0023"></div><div class="circle" style="background-color:#F781BF"></div><div class="celltext">Glut-GABA-Glyc</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0005"></div><div class="circle" style="background-color:#A65628"></div><div class="celltext">Glut-Chol</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0004"></div><div class="circle" style="background-color:#73E785"></div><div class="celltext">Chol</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0012"></div><div class="circle" style="background-color:#B8EC68"></div><div class="celltext">Chol-Dopa</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0006"></div><div class="circle" style="background-color:#000080"></div><div class="celltext">GABA-Chol</div></td>
</tr>
<tr>
<td><div id="CS20251031_NEUR_0007"></div><div class="circle" style="background-color:#800000"></div><div class="celltext">Glut-GABA-Chol</div></td>
</tr>
</tbody>
</table>
</body>
</html>.

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