HMBA-BG Spatial Release

What's Changed

• Docs: Markdown page to serve HMBA neuroglancer views by @mikejhuang in #91
• neuroglancer views frontend myst by @mikejhuang in #92
• Rc/1.0.0 by @morriscb in #85

New Contributors

• @mikejhuang made their first contribution in #91

Full Changelog: v3.1.5...v3.2.0

v3.1.5

Full Changelog: v3.1.4...v3.1.5

v3.1.4

What's Changed

• Add ASAP-PMDBS dataset. by @morriscb in #75
• rc/0.6.0 by @morriscb in #74

Full Changelog: v3.1.3...v3.1.4

v3.1.3

What's Changed

• Update aging UMAP coords by @morriscb in #71
• Rc/0.5.0 by @morriscb in #72

Full Changelog: v3.1.2...v3.1.3

v3.1.2

What's Changed

• Separate out dependencies in pyproject. by @morriscb in #67
• Aging Mouse notebooks by @morriscb in #64
• Rc/0.4.0 by @morriscb in #68

Full Changelog: v3.1.1...v3.1.2

v3.1.1

What's Changed

• Add missing imputed merfish link. by @morriscb in #59
• Fixup link. by @morriscb in #60
• Rc/0.3.0 by @morriscb in #63

Full Changelog: v3.1.0...v3.1.1

v3.1.0

What's Changed

• Rc/0.2.0 by @morriscb in #52

Full Changelog: v3.0.2...v3.1.0

v3.0.2

What's Changed

• Create script to run gene selection from expression matrices for running on CodeOcean. by @morriscb in #49
• Add matplotlib magic and bug fixes. #50

Full Changelog: v3.0.1...v3.0.2

v3.0.1

What's Changed

• Rc/0.1.0 by @morriscb in #47
• Compatibility for read only caches in #48

Full Changelog: v3.0.0...v3.0.1

Add Siletti et al., WHB data and provide AbcProjectCache object.

Release Notes

• [Spring 2024 Public Beta (version 20240330)]
  • Added Whole Human Brain transcriptomic, taxonomy and clustering datasets
    from Siletti et al. 2023 to the ABC Atlas.
  • Added new AbcProjectCache python class to facilitate data download and
    usage.
    • Added file hashes to the manifest.json to facilitate data integrity
      checks in the cache class.
  • Updated all jupyter notebooks to use the new AbcProjectCache class.
  • Added new notebooks for the whole human brain datasets.
  • Re-organized jupyter-book webpages.

What's Changed

• update data and notebooks to reflect minor WMB updates by @lydiang in #32
• Create Manifest and FileAttributes class by @morriscb in #35
• Create initial S3 cache objects by @morriscb in #36
• Create user facing cache object by @morriscb in #37
• Modify jupyter book pages and notebooks. by @morriscb in #38
• Add new cache object and upate notebooks/webpage for WHB release. by @morriscb in #45

New Contributors

• @morriscb made their first contribution in #35

Full Changelog: v2.0.0...v3.0.0