add clear error printing in cell matching nb #625
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| name: test | |
| on: | |
| push: | |
| branches: [ "dev" ] | |
| pull_request: | |
| branches: [ "dev" ] | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: | |
| group: LargerInstance | |
| container: | |
| image: rcpeene/openscope_databook:latest | |
| env: | |
| DANDI_API_KEY: ${{ secrets.DANDI_API_KEY }} | |
| TESTING: True | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # - name: Upgrading pip | |
| # run: pip install --upgrade pip | |
| - name: Install cython | |
| run: pip install cython numpy==1.26 | |
| - name: Installing requirements | |
| run: pip install -r ./requirements.txt | |
| - name: Installing packages again (this prevents a weird error in cell matching nb) | |
| run: pip install -r requirements.txt | |
| - name: Installing build dependencies | |
| run: | | |
| pip install markupsafe==2.0.1 | |
| pip install jupyter | |
| pip install -U jupyter-book | |
| pip install nbmake | |
| pip install pytest-xdist | |
| - name: Printing environment | |
| run: pip freeze | |
| - name: Getting changed files | |
| id: changed_files | |
| uses: Ana06/[email protected] | |
| with: | |
| filter: "*.ipynb" | |
| - name: Testing notebooks | |
| if: ${{ steps.changed_files.outputs.added_modified != '' }} | |
| run: pytest --nbmake --nbmake-timeout=5000 -n=auto ${{ steps.changed_files.outputs.added_modified }} | |