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Response to Issue #79 #80

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Response to Issue #79 #80

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3 changes: 0 additions & 3 deletions sis/spot_table.py
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Original file line number Diff line number Diff line change
Expand Up @@ -464,7 +464,6 @@ def save_csv(self, file_name: str, columns: list|None=None):
'y': self.y,
'z': self.z,
'gene_id': self.gene_ids,
'cell_id': self.cell_ids,
}
if 'gene_name' in columns:
col_data['gene_name'] = self.gene_names
Expand All @@ -482,8 +481,6 @@ def save_csv(self, file_name: str, columns: list|None=None):
# which columns to write?
if columns is None:
columns = ['x', 'y', 'z', 'gene_id']
if self.cell_ids is not None:
columns.append('cell_id')

# write csv
header = ','.join(columns)
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