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Add two new aligners

Status: Open.

#102 In BD2KGenomics/toil-lib;

· fnothaft opened on Aug 14, 2017

Add benchmarking mode to all tools

Status: Open.

#101 In BD2KGenomics/toil-lib;

· fnothaft opened on Aug 14, 2017

Make docker image parametrizable for all tools

Status: Open.

#100 In BD2KGenomics/toil-lib;

· fnothaft opened on Aug 14, 2017

Add new variant callers to benchmark against

enhancement

Status: Open.

#97 In BD2KGenomics/toil-lib;

· fnothaft opened on Aug 11, 2017

ADAM recompute upgrades

Status: Open.

#90 In BD2KGenomics/toil-lib;

· fnothaft opened on Apr 20, 2017

Move jpfeil/oncotator:1.9 to cgl-docker-lib

Status: Open.

#79 In BD2KGenomics/toil-lib;

· jvivian opened on Jan 20, 2017

Add support for Redwood

Status: Open.

#69 In BD2KGenomics/toil-lib;

· jvivian opened on Jan 3, 2017

Add mark secondary option to run_bwakit

Status: Open.

#61 In BD2KGenomics/toil-lib;

· jpfeil opened on Nov 14, 2016

Add manual (Sphinx documentation)

Status: Open.

#59 In BD2KGenomics/toil-lib;

· hannes-ucsc opened on Oct 30, 2016

Add unit tests for tools

Status: Open.

#54 In BD2KGenomics/toil-lib;

· cket opened on Oct 10, 2016

Signature of docker_call is getting out of control

enhancement

Status: Open.

#1 In BD2KGenomics/toil-lib;

· hannes-ucsc opened on Sep 2, 2016