Add more dependencies to root JSON file

Python/setup.py

@@ -64,11 +64,12 @@
 else:
     package_data = {}
 
-# Parse WarpX version information
+# Parse WarpX, PICMI versions information
 dependencies_file = "../dependencies.json"
 with open(dependencies_file, "r") as file:
     dependencies_data = json.load(file)
 warpx_version = dependencies_data.get("version_warpx")
+picmi_version = dependencies_data.get("version_picmi")
 
 setup(
     name="pywarpx",
@@ -77,7 +78,7 @@
     package_dir={"pywarpx": "pywarpx"},
     description="""Wrapper of WarpX""",
     package_data=package_data,
-    install_requires=["numpy", "picmistandard==0.33.0", "periodictable"],
+    install_requires=["numpy", f"picmistandard=={picmi_version}", "periodictable"],
     python_requires=">=3.8",  # left for CI, truly ">=3.9"
     zip_safe=False,
 )

Tools/Release/update_dependencies.py

@@ -42,6 +42,22 @@ def update(args):
         repo_dict["picsar"]["tags"] = (
             "https://api.github.com/repos/ECP-WarpX/picsar/tags"
         )
+    if args.all or args.pybind11:
+        repo_dict["pybind11"] = {}
+        repo_dict["pybind11"]["commit"] = (
+            "https://api.github.com/repos/pybind/pybind11/commits/master"
+        )
+        repo_dict["pybind11"]["tags"] = (
+            "https://api.github.com/repos/pybind/pybind11/tags"
+        )
+    if args.all or args.picmi:
+        repo_dict["picmi"] = {}
+        repo_dict["picmi"]["commit"] = (
+            "https://api.github.com/repos/picmi-standard/picmi/commits/master"
+        )
+        repo_dict["picmi"]["tags"] = (
+            "https://api.github.com/repos/picmi-standard/picmi/tags"
+        )
     if args.all or args.warpx:
         repo_dict["warpx"] = {}
         repo_dict["warpx"]["commit"] = (
@@ -56,6 +72,8 @@ def update(args):
         "amrex": "AMReX",
         "pyamrex": "pyAMReX",
         "picsar": "PICSAR",
+        "pybind11": "pybind11",
+        "picmi": "PICMI",
         "warpx": "WarpX",
     }
 
@@ -72,17 +90,22 @@ def update(args):
     # loop over repositories and update dependencies data
     for repo_name, repo_subdict in repo_dict.items():
         print(f"\nUpdating {repo_labels[repo_name]}...")
+
         # set keys to access dependencies data
         commit_key = f"commit_{repo_name}"
         version_key = f"version_{repo_name}"
+
         # get new commit information
         commit_response = requests.get(repo_subdict["commit"])
         commit_dict = commit_response.json()
+
         # set new commit
         repo_commit_sha = commit_dict["sha"]
+
         # get new version tag information
         tags_response = requests.get(repo_subdict["tags"])
         tags_list = tags_response.json()
+
         # filter out old-format tags for specific repositories
         tags_list_filtered = copy.deepcopy(tags_list)
         if repo_name == "amrex":
@@ -97,15 +120,18 @@ def update(args):
                 for tag_dict in tags_list
                 if (tag_dict["name"] != "PICSARlite-0.1")
             ]
+
         # set new version tag
         if repo_name == "warpx":
             # current date version for the WarpX release update
             repo_version_tag = datetime.date.today().strftime("%y.%m")
         else:
             # latest available tag (index 0) for all other dependencies
             repo_version_tag = tags_list_filtered[0]["name"]
+
         # use version tag instead of commit sha for a release update
         new_commit_sha = repo_version_tag if args.release else repo_commit_sha
+
         # update commit
         if repo_name != "warpx":
             print(f"- old commit: {dependencies_data[commit_key]}")
@@ -115,6 +141,7 @@ def update(args):
             else:
                 print("Updating commit...")
                 dependencies_data[f"commit_{repo_name}"] = new_commit_sha
+
         # update version
         print(f"- old version: {dependencies_data[version_key]}")
         print(f"- new version: {repo_version_tag}")
@@ -124,6 +151,21 @@ def update(args):
             print("Updating version...")
             dependencies_data[f"version_{repo_name}"] = repo_version_tag
 
+            # update PICMI version in requirements.txt files manually
+            if repo_name == "picmi":
+                files = [
+                    os.path.join(repo_dir, "requirements.txt"),
+                    os.path.join(repo_dir, "Docs", "requirements.txt"),
+                ]
+                for filename in files:
+                    with open(filename) as f:
+                        lines = f.readlines()
+                    with open(filename, "w") as f:
+                        for line in lines:
+                            if line.startswith("picmistandard=="):
+                                line = f"picmistandard=={repo_version_tag}\n"
+                            f.write(line)
+
     # write to JSON file with dependencies data
     with open(dependencies_file, "w") as file:
         json.dump(dependencies_data, file, indent=4)
@@ -157,6 +199,22 @@ def update(args):
         dest="picsar",
     )
 
+    # add arguments: pybind11 option
+    parser.add_argument(
+        "--pybind11",
+        help="Update pybind11 only",
+        action="store_true",
+        dest="pybind11",
+    )
+
+    # add arguments: PICMI option
+    parser.add_argument(
+        "--picmi",
+        help="Update PICMI only",
+        action="store_true",
+        dest="picmi",
+    )
+
     # add arguments: WarpX option
     parser.add_argument(
         "--warpx",
@@ -178,7 +236,16 @@ def update(args):
 
     # set args.all automatically
     args.all = (
-        False if (args.amrex or args.pyamrex or args.picsar or args.warpx) else True
+        False
+        if (
+            args.amrex
+            or args.pyamrex
+            or args.picsar
+            or args.pybind11
+            or args.picmi
+            or args.warpx
+        )
+        else True
     )
 
     # update

cmake/dependencies/pybind11.cmake

@@ -37,7 +37,7 @@ function(find_pybind11)
             mark_as_advanced(FETCHCONTENT_UPDATES_DISCONNECTED_FETCHEDpybind11)
         endif()
     else()
-        find_package(pybind11 3.0.1 CONFIG REQUIRED)
+        find_package(pybind11 ${pybind11_version} CONFIG REQUIRED)
         message(STATUS "pybind11: Found version '${pybind11_VERSION}'")
     endif()
 endfunction()
@@ -52,7 +52,16 @@ option(WarpX_pybind11_internal "Download & build pybind11" ON)
 set(WarpX_pybind11_repo "https://github.com/pybind/pybind11.git"
     CACHE STRING
     "Repository URI to pull and build pybind11 from if(WarpX_pybind11_internal)")
-set(WarpX_pybind11_branch "v3.0.1"
+
+# Parse pybind11 version and commit information
+file(READ "${WarpX_SOURCE_DIR}/dependencies.json" dependencies_data)
+string(JSON pybind11_version GET "${dependencies_data}" version_pybind11)
+string(JSON pybind11_commit GET "${dependencies_data}" commit_pybind11)
+
+# Strip "v" prefix from version for find_package
+string(REGEX REPLACE "^v" "" pybind11_version "${pybind11_version}")
+
+set(WarpX_pybind11_branch ${pybind11_commit}
     CACHE STRING
     "Repository branch for WarpX_pybind11_repo if(WarpX_pybind11_internal)")
 

dependencies.json

@@ -3,7 +3,11 @@
     "version_amrex": "25.09",
     "version_pyamrex": "25.09",
     "version_picsar": "25.06",
+    "version_pybind11": "v3.0.1",
+    "version_picmi": "0.33.0",
     "commit_amrex": "df200093d90f58f0e0e09a5d6146fdb9b0258f22",
     "commit_pyamrex": "a4b60d0e76d0f216f788a6e85c8add38a6a945e3",
-    "commit_picsar": "0c329e66010267662a82219f7de7abbd231463f4"
-}
+    "commit_picsar": "0c329e66010267662a82219f7de7abbd231463f4",
+    "commit_pybind11": "30748f863f18c2e0d48e9dcb3be1e77542904da8",
+    "commit_picmi": "37bb651396d3d33bacfeac016f8745f2434b4e96"
+}