Init uv environment

.github/workflows/pre-commit.yaml

@@ -13,6 +13,9 @@ jobs:
     - uses: actions/setup-python@v6
       with:
         python-version: 3.12
+    - uses: astral-sh/setup-uv@v7
+      with:
+        enable-cache: true
     - uses: actions/cache@v5
       with:
         path: |

.pre-commit-config.yaml

@@ -24,6 +24,15 @@ repos:
     # Run the formatter
     - id: ruff-format
       args: ['--line-length', '79']
+
+- repo: local
+  hooks:
+    - id: uv-sync
+      name: UV sync dependencies
+      entry: uv sync --dev --locked --all-packages --all-extras
+      language: system
+      pass_filenames: false
+
 #####
 # R
 -   repo: https://github.com/lorenzwalthert/precommit

README.md

@@ -6,6 +6,13 @@ This project is a calibration runner framework that can be installed and integra
 
 CDC Center for Forecasting and Outbreak Analytics.
 
+## Getting Started
+This project uses `uv` for python venv management. Be sure to have `uv` [installed on your machine](https://docs.astral.sh/uv/getting-started/installation/). To begin, ensure all workspaces in the repo are synchronized by running
+
+```{bash}
+uv sync --all-packages --all-extras
+```
+
 ## General Disclaimer
 This repository was created for use by CDC programs to collaborate on public health related projects in support of the [CDC mission](https://www.cdc.gov/about/organization/mission.htm).  GitHub is not hosted by the CDC, but is a third party website used by CDC and its partners to share information and collaborate on software. CDC use of GitHub does not imply an endorsement of any one particular service, product, or enterprise.
 

pyproject.toml

@@ -0,0 +1,19 @@
+[project]
+name = "calibrationtools"
+version = "0.1.0"
+description = "Calibration runner framework to fit models to data."
+readme = "README.md"
+requires-python = ">=3.12"
+dependencies = [
+    "numpy>=2.3.4",
+    "pyarrow>=23.0.0",
+    "pytest>=9.0.2",
+    "scipy>=1.16.3",
+]
+
+[build-system]
+requires = ["uv_build>=0.8.13,<0.9.0"]
+build-backend = "uv_build"
+
+[tool.uv]
+package = true