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The existing Makefile is oriented around directories, which means that make can't see when outputs have been created. This meant that, every time
makewas called, every single step would be rerun, regardless of what files had actually been updated.Instead, individuals files as make targets. The diagnostics step produces an unknown number of outputs, so make a dummy status file as its output.
Also reorganize to
output/RUN_ID/. Organizing byoutput/data/some.parquet, etc. was a speculative benefit if we wanted to have Hive-style access across multiple runs.