Search results

QC step to exclude failed samples (based on CDC recommended FASTQ QC thresholds) from analysis.

Status: Open.

#125 In CDCgov/mycosnp-nf;

· jessres opened on Nov 7, 2024

GenomicsDBimport for large sample sizes

Status: Open.

#117 In CDCgov/mycosnp-nf;

· arunbodd opened on Jul 16, 2024

Multiple versions of programs in pipeline

Status: Open.

#86 In CDCgov/mycosnp-nf;

· rpetit3 opened on Nov 14, 2022

changes to the paths of custom scripts in local modules for cloud computing

Status: Open.

#81 In CDCgov/mycosnp-nf;

· cjjossart opened on Aug 3, 2022

Create_Specific_Profiles_For_species_specific_qc_configs

enhancementNew feature or requestNew feature or request

Status: Open.

#56 In CDCgov/mycosnp-nf;

· sateeshperi opened on May 6, 2022

[feature request] consider checking for read-level contamination with Kraken2

enhancementNew feature or requestNew feature or request

Status: Open.

#52 In CDCgov/mycosnp-nf;

· kapsakcj opened on Apr 28, 2022